miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
          (castor bean)
          Length = 96

 Score =  113 bits (57), Expect = 4e-25
 Identities = 85/93 (91%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagca-caaa 59
          ||||||||||||||||||||||||||||||||| |||||||||||||||  |  |  |||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaa 62

                                           
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
          | |||||||||||||||||||||||||||||||
Sbjct: 63 cgcatgaatcgatcgataaacctctgcatccag 95




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
          (papaya)
          Length = 91

 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 83/92 (90%), Gaps = 4/92 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
          |||||||||||||||||||||||||||||||  ||| |||| |||||||  | |||| | 
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctg--ggaatttggtgtgaaa-aatcacaga- 58

                                          
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
          ||||||||||||||||||||||||||||||||
Sbjct: 59 acatgaatcgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
          trichocarpa
          Length = 91

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 82/93 (88%), Gaps = 6/93 (6%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaa 59
          ||||||||||||||||||||||||||||||||   ||||| ||||    ||||||| |||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaa 57

                                           
Query: 60 cacatgaatcgatcgataaacctctgcatccag 92
           ||||||| ||||||||||||||||||||||||
Sbjct: 58 aacatgaaccgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  ctggaggcagcggttcatcgatctcttcctg 31
          |||||||||||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctg 33



 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 62 catgaatcgatcgataaacctctgcatccag 92
          ||||||| |||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccag 87




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
          (thale cress)
          Length = 91

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 65 gaatcgatcgataaacctctgcatccag 92
          ||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ctggaggcagcggttcatcgatc 23
          |||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatc 25




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 79/93 (84%), Gaps = 6/93 (6%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaac 60
          |||||||||||||||||||||||| ||||| || |||||| ||||    ||  ||| |||
Sbjct: 3  ctggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacgaac 57

                                           
Query: 61 -acatgaatcgatcgataaacctctgcatccag 92
           ||| ||| ||||||||||||||||||||||||
Sbjct: 58 aacacgaaccgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
          (barrel medic)
          Length = 90

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 61 acatgaatcgatcgataaacctctgcatccag 92
          |||||||||| |||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccag 89



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  ctggaggcagcggttcatcgatctcttcctg 31
          ||||| |||||||||||||||||| ||||||
Sbjct: 3  ctggatgcagcggttcatcgatctgttcctg 33




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 65  gaatcgatcgataaacctctgcatccag 92
           ||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccag 131




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 65  gaatcgatcgataaacctctgcatccag 92
           ||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 65  gaatcgatcgataaacctctgcatccag 92
           ||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 1  ctggaggcagcggttcatcgatctcttcctg 31
          ||||| |||||||||||||||||||||||||
Sbjct: 3  ctggatgcagcggttcatcgatctcttcctg 33




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 65  gaatcgatcgataaacctctgcatccag 92
           |||||| |||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccag 132




>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
           Japonica Group
          Length = 117

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 65  gaatcgatcgataaacctctgcatccag 92
           |||||||||||||| |||||||||||||
Sbjct: 89  gaatcgatcgataagcctctgcatccag 116




>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
          subsp. pekinensis
          Length = 92

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  ctggaggcagcggttcatcgatctctt 27
          ||||||||||||||| |||||||||||
Sbjct: 3  ctggaggcagcggttgatcgatctctt 29