miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtc 25
|||||||||||||||||||||||||
Sbjct: 107 tagccaaggatgacttgcctatgtc 83
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctatgtc 25
||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtc 24
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctatgtc 25
||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtc 24
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctat 100
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 132 tagccaaggatgacttgcctat 111
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtcttctt 30
|||||||||||||||||||| || ||||||
Sbjct: 134 tagccaaggatgacttgcctgtggcttctt 105
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 67 ggtctcatgggcagtcaccttggcta 92
|||||||||||||||| |||||||||
Sbjct: 46 ggtctcatgggcagtctccttggcta 21
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 107 tagccaaggatgacttgcctat 86
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 109 tagccaaggatgacttgcctat 88
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 125 tagccaaggatgacttgcctat 104
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatgtct 26
|||||||||||||||||||| |||||
Sbjct: 124 tagccaaggatgacttgcctgtgtct 99
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctat 37
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctat 34
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctat 30
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctat 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 ggtctcatgggcagtcaccttggcta 92
|||||||||||||||| |||||||||
Sbjct: 70 ggtctcatgggcagtctccttggcta 95
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatgtct 26
|||||||||||||||||||| |||||
Sbjct: 14 tagccaaggatgacttgcctgtgtct 39
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctat 35
