miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 232 bits (117), Expect = 1e-60
Identities = 132/137 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatgcatacagagtgagagagacatttctt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcatgcacacagagtgagagagacatttctt 70
Query: 61 gctcgagttatgactcttacctactatagattttgttggcctcagtgagttagttcttca 120
||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct: 71 gctggagttatgactcttacctactatagattgtgttggcttcagcgagttagttcttca 130
Query: 121 tgtgcctgtcttcccca 137
|||||||||||||||||
Sbjct: 131 tgtgcctgtcttcccca 147
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 133 bits (67), Expect = 7e-31
Identities = 122/141 (86%), Gaps = 7/141 (4%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatgcatacagagtgagagagacatttctt 60
||||||||||||||||||||| |||||||||||||| |||||| | |||| ||||||||
Sbjct: 3 tggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttctt 62
Query: 61 gct-------cgagttatgactcttacctactatagattttgttggcctcagtgagttag 113
||| ||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 63 gctggagttacgagttacgactcttacctactattgattttgttagctccagtgagttag 122
Query: 114 ttcttcatgtgcctgtcttcc 134
|| ||||||||||||||||||
Sbjct: 123 ttattcatgtgcctgtcttcc 143
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatgcata 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcatgcata 48
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 gttagttcttcatgtgcctgtcttcccca 137
|||||||||||||||||| ||||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttcccca 114
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatgca 36
||||||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcatgca 46
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatgca 36
||||||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcatgca 46
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 106 tgagttagttcttcatgtgcctgtcttcccca 137
||||||||||||||||||||| ||||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttcccca 105
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatgca 36
||||||||||||||||||||||||||| ||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctcatgca 46
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatg 34
||||||||||||||||||||| ||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatactaactcatg 44
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 106 tgagttagttcttcatgtgcctgtcttcccca 137
||||||||||||||||||||| |||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttcccca 143
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcat 33
||||||||||||||||||||||||||| |||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcat 33
||||||||||||||||||||||||||| |||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcat 33
||||||||||||||||||||||||||| |||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattacta 27
|||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatg 34
||||||||||||||||||||| | ||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactcatg 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 103 cagtgagttagttcttcatgtgcctgtcttcccca 137
|||||||||||| ||||||||||| |||||||||
Sbjct: 251 cagtgagttagtgcttcatgtgcccctcttcccca 285
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcatg 34
||||||||||||||||||||| |||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaacactaactcatg 44
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattact 26
||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattact 36
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcat 33
||||||||||||||||||||| | |||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattac 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattac 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattac 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcatt 23
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcat 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcat 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcat 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
