miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 67.9 bits (34), Expect = 4e-11
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatgg 59
|||||||||||||||||||| ||||| | |||| ||||| || |||||||||| ||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 60 attccacagtccta 73
| ||||||||||||
Sbjct: 71 a-tccacagtccta 83
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 93 ggataggcttgcggcttgcatatgttaggagcttt 127
||||||| ||||||||||||||| | |||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagcttt 131
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 61.9 bits (31), Expect = 3e-09
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 108 ttgcatatgttaggagcttt--tttacctctttgttttatctttctttggattgaaggga 165
|||||||||| ||||||||| |||||| |||||||| ||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 182
Query: 166 gctcta 171
||||||
Sbjct: 183 gctcta 188
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 58.0 bits (29), Expect = 4e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 102 tgcggcttgcatatgttaggagcttttttacctctttgttttatctttctttggattgaa 161
|||||||||||||| | ||||||||| |||||| | ||| |||||| |||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaa 156
Query: 162 gggagctct 170
|||||||||
Sbjct: 157 gggagctct 165
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaaaagagga-tttgcagggtaaatcaagctgctaatctatggat 61
|||||||||||||||||| |||||| |||||||||| || |||||| | ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 tccacagtccta 73
||||||| ||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 54.0 bits (27), Expect = 6e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 93 ggataggcttgcggcttgcatatgttaggagcttttttacctctttgttttatctttctt 152
||||||||||| ||||||||||| | |||||||| |||||| | | || ||| || ||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 163
Query: 153 tggattgaagggagctcta 171
|||||||||||||||||||
Sbjct: 164 tggattgaagggagctcta 182
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatgg 59
|||||||||||||||||||| ||||||| ||| ||||| || ||||||| | ||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 60 attccacagtccta 73
|| |||||| ||||
Sbjct: 71 atcccacagcccta 84
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 148 ttctttggattgaagggagctcta 171
||||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctcta 192
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 ttctttggattgaagggagctct 170
|||||||||||||||||||||||
Sbjct: 173 ttctttggattgaagggagctct 195
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagagg 26
|||||||||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagg 36
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 149 tctttggattgaagggagctct 170
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 149 tctttggattgaagggagctct 170
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 149 tctttggattgaagggagctct 170
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 149 tctttggattgaagggagctct 170
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
