miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 103 bits (52), Expect = 3e-22
Identities = 76/83 (91%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
|||||||||||||||||||||||||||||||||| || || ||| ||||||||||||
Sbjct: 12 atgttggtgaggttcaatccgaagacggatttac--atgtatagagttgtaaaatacgat 69
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 70 ctcagattgagccgcgccaatat 92
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 83.8 bits (42), Expect = 3e-16
Identities = 73/83 (87%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
|||||||||||||||||||||||||||||||||| |||| || ||||| |||||
Sbjct: 12 atgttggtgaggttcaatccgaagacggatttac----acattctgttgtaaaggacgat 67
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 68 ctcagattgagccgcgccaatat 90
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 79.8 bits (40), Expect = 5e-15
Identities = 72/83 (86%), Gaps = 6/83 (7%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 12 atgttggtgaggttcaatccgaagacggatttacgaa------gagccgtaaagaacgat 65
Query: 61 ctcagattgagccgcgccaatat 83
||| |||||||||||||||||||
Sbjct: 66 ctctgattgagccgcgccaatat 88
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 65.9 bits (33), Expect = 7e-11
Identities = 72/83 (86%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
||||||||||||||||||||||||||| ||||| | | ||| ||||||| |||||
Sbjct: 12 atgttggtgaggttcaatccgaagacgaatttatg--cttatt--ttcgtaaagaacgat 67
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 68 ctcagattgagccgcgccaatat 90
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 49 gtaaaatacgatctcagattgagccgcgccaatat 83
||||||| |||||||||||||||||||||||||||
Sbjct: 49 gtaaaatccgatctcagattgagccgcgccaatat 83
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttac 34
|||||||||||||||||||||||||| |||||||
Sbjct: 5 atgttggtgaggttcaatccgaagacagatttac 38
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttac 34
||||||||||||||||||| |||||| |||||||
Sbjct: 12 atgttggtgaggttcaatctgaagacagatttac 45
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 cgatctcagattgagccgcgccaatat 83
|||||||||| ||||||||||||||||
Sbjct: 65 cgatctcagaatgagccgcgccaatat 91
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 gatctcagattgagccgcgccaatat 83
||||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatat 88
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatat 85
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatat 83
||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatat 84
