miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 62
|||||||||||||||||| ||||||||||||||||| || |||||| || ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 tccacagtccta 74
||||||| ||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 67.9 bits (34), Expect = 4e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgg 60
|||||||||||||||||||| ||||| | |||| ||||| || |||||||| | ||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 61 attccacagtccta 74
| ||||||||||||
Sbjct: 71 a-tccacagtccta 83
Score = 54.0 bits (27), Expect = 6e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 92 ggataggcttgcggcttgcatatgttaggagctttattacctctttgttttatctttctt 151
||||||| ||||||||||||||| | |||||||||||| ||| |||| ||| | ||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcct-aatgttagatccctttt 155
Query: 152 tggattgaagggagctcta 170
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctcta 174
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 67.9 bits (34), Expect = 4e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgg 60
|||||||||||||||||||| ||||||| ||| ||||| || ||||||||| ||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 attccacagtccta 74
|| |||||| ||||
Sbjct: 71 atcccacagcccta 84
Score = 61.9 bits (31), Expect = 3e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 92 ggataggcttgcggcttgcatatgttaggagctttattacctctttgttttatctttctt 151
||||||||||| ||||||||||| | |||||||| ||||||| | | || ||| || ||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 163
Query: 152 tggattgaagggagctcta 170
|||||||||||||||||||
Sbjct: 164 tggattgaagggagctcta 182
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 65.9 bits (33), Expect = 2e-10
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 101 tgcggcttgcatatgttaggagctttattacctctttgttttatctttctttggattgaa 160
|||||||||||||| | |||||||||||||||| |||| |||||| |||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacct-aatgttagatctttttttggattgaa 156
Query: 161 gggagctct 169
|||||||||
Sbjct: 157 gggagctct 165
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 61.9 bits (31), Expect = 3e-09
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 107 ttgcatatgttaggagctttatt--acctctttgttttatctttctttggattgaaggga 164
|||||||||| |||||||||||| ||| |||||||| ||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 182
Query: 165 gctcta 170
||||||
Sbjct: 183 gctcta 188
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgg 60
|||||||||||||||||||| ||| ||| | |||| || || ||||||||| ||||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgg 70
Query: 61 attccacagtccta 74
||||| ||| ||||
Sbjct: 71 attcctcagcccta 84
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgg 60
|||||||||||||||||||| ||||| | || | ||||| || ||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 attccacagtccta 74
|| |||||| ||||
Sbjct: 71 atcccacagcccta 84
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 147 ttctttggattgaagggagctcta 170
||||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctcta 192
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 147 ttctttggattgaagggagctct 169
|||||||||||||||||||||||
Sbjct: 173 ttctttggattgaagggagctct 195
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
