miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 83.8 bits (42), Expect = 3e-16
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcct--gaatttggctgtggaagaacacaaagca 58
|||||||||||||||||||||||||||||| |||||||| |||| || | |||| | ||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatcacagaaca 61
Query: 59 agaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 62 tgaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaag 60
||||| ||||||||||||||||||||||||||| ||| |||| || || || | ||||
Sbjct: 3 ctggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatcaag 60
Query: 61 aatcggtcgataaacctctgcatccag 87
|||||||||||||||||||||||||||
Sbjct: 61 aatcggtcgataaacctctgcatccag 87
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aaagcaagaatcggtcgataaacctctgcatccag 87
|||||| |||| | |||||||||||||||||||||
Sbjct: 53 aaagcatgaatagatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 aaagcaagaatcggtcgataaacctctgcatccag 87
||||||||||||| |||||||||||||||||||||
Sbjct: 56 aaagcaagaatcgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 3 ctggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaattt 36
||||| |||||||||||||||||| |||||||||||
Sbjct: 3 ctggatgcagcggttcatcgatctgttcctgaattt 38
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
||||||||||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccag 132
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctctt 27
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
