miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 285 bits (144), Expect = 9e-77
Identities = 158/165 (95%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 62 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 120
Query: 122 tttattacctaatgttagatcnnnnnnnggattgaagggagctct 166
||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 tttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 99.6 bits (50), Expect = 1e-20
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
||||||||||||||||||||||| | || || ||||||||| |||||||||||||||| |
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 61 tcccacagccctat 74
||||||||||||||
Sbjct: 72 tcccacagccctat 85
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 85.7 bits (43), Expect = 2e-16
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 99 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 158
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 159 ggagctct 166
||||||||
Sbjct: 166 ggagctct 173
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 85.7 bits (43), Expect = 2e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
||||||||||||||||||||||| | || | |||||||||| |||||||||| |||| |
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 71
Query: 61 tcccacagccctatc 75
|||||||||||||||
Sbjct: 72 tcccacagccctatc 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 63.9 bits (32), Expect = 6e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 61
|||||||||||||||||||||| | | ||| |||| ||| ||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 cccacagcccta 73
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 54.0 bits (27), Expect = 6e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
||||||||||||||||||| ||||| || | || ||||| |||||||||| ||||| |
Sbjct: 12 ggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgga 71
Query: 61 tcccacagccctatc 75
| || ||||||||||
Sbjct: 72 ttcctcagccctatc 86
