miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataa 70
Query: 61 cacatctgtcttttcatgtgttctcaggtcacccctg 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 71 cacatctgtcttttcatgtgttctcaggtcacccctg 107
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 81.8 bits (41), Expect = 2e-15
Identities = 84/97 (86%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 cagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataa 60
|||||| |||||||||||||| | | ||||||||||||||||||||| || ||||| | |
Sbjct: 11 cagggttgatatgagaacacacgagtaatcaacggctgtaatgacgctacgtcattgtta 70
Query: 61 cacatctgtcttttcatgtgttctcaggtcacccctg 97
|| ||| |||||||||||||||||||||||||||
Sbjct: 71 cagctct-cgttttcatgtgttctcaggtcacccctg 106
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 75.8 bits (38), Expect = 9e-14
Identities = 83/97 (85%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 1 cagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataa 60
|||||| |||||||||||||| | ||||||||||||| ||| ||||| || ||||| |
Sbjct: 11 cagggttgatatgagaacacacgagcaatcaacggctataacgacgctacgtcattgt-- 68
Query: 61 cacatctgtcttttcatgtgttctcaggtcacccctg 97
||| || || ||||||||||||||||||||||||||
Sbjct: 69 tacagctctcgtttcatgtgttctcaggtcacccctg 105
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tttcatgtgttctcaggtcacccctg 97
||||||||||||||||||| ||||||
Sbjct: 103 tttcatgtgttctcaggtcgcccctg 128
