miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya (papaya)
          Length = 103

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 118 tttgtgttctcaggtcacccctt 140
           |||||||||||||||||||||||
Sbjct: 71  tttgtgttctcaggtcacccctt 93




>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana (thale
           cress)
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 118 tttgtgttctcaggtcacccctt 140
           |||||||||||||||||||||||
Sbjct: 73  tttgtgttctcaggtcacccctt 95




>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
           (barrel medic)
          Length = 108

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 118 tttgtgttctcaggtcacccctt 140
           |||||||||||||||||||||||
Sbjct: 76  tttgtgttctcaggtcacccctt 98




>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 118 tttgtgttctcaggtcacccctt 140
           |||||||||||||||||||||||
Sbjct: 73  tttgtgttctcaggtcacccctt 95




>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
          Length = 132

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 ttgtgttctcaggtcacccctt 140
           ||||||||||||||||||||||
Sbjct: 101 ttgtgttctcaggtcacccctt 122




>RF00695;MIR398;AC232704.1/64360-64470 4081:Solanum lycopersicum
          Length = 111

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 ttgtgttctcaggtcacccctt 140
           ||||||||||||||||||||||
Sbjct: 80  ttgtgttctcaggtcacccctt 101