miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 cggcggttctgattgagccgtgccaatat 76
||||| |||||||||||||||||||||||
Sbjct: 63 cggcgtttctgattgagccgtgccaatat 91
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 cggcggttctgattgagccgtgccaatat 76
||||| |||||||||||||||||||||||
Sbjct: 63 cggcgtttctgattgagccgtgccaatat 91
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 ggcggttctgattgagccgtgccaatat 76
|||| |||||||||||||||||||||||
Sbjct: 71 ggcgtttctgattgagccgtgccaatat 98
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatat 124
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagaccac 26
||||||||||| ||||||||||||||
Sbjct: 12 atgttggctcggctcactcagaccac 37
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatat 124
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 101 ttctgattgagccgtgccaatat 123
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatat 108
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatat 108
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatat 102
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatat 82
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 54 tctgattgagccgtgccaatat 75
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatat 120
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatat 88
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 64 tctgattgagccgtgccaatat 85
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 68 tctgattgagccgtgccaatat 89
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 65 tctgattgagccgtgccaatat 86
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatat 84
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatat 99
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatat 102
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatat 116
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 ggttctgattgagccgtgccaatat 76
|||| ||||||||||||||||||||
Sbjct: 77 ggttttgattgagccgtgccaatat 101
