miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 79.8 bits (40), Expect = 5e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 22 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 80
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 81 tgcactgcctcttccctggc 100
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 75.8 bits (38), Expect = 8e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 2 ctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcact 61
|||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||
Sbjct: 20 ctgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacc 79
Query: 62 catgcactgcctcttccctggc 83
| ||||||||||||||||||||
Sbjct: 80 cctgcactgcctcttccctggc 101
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggc 104
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 100 tctgttgtggctacgctcatgcactgcctcttccctggc 138
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 actcatgcactgcctcttccctggc 83
|||||||||||||||||||||||||
Sbjct: 94 actcatgcactgcctcttccctggc 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaaca 37
||||| |||||||||||||||| |||||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagctatcaaca 56
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggc 107
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggc 107
