miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttctctct 32
|||||||||||||||||||||||| |||||||
Sbjct: 14 tgaagctgccagcatgatcttaacctctctct 45
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttc 27
|||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaacttc 40
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 aagatcagatcatgtggcagtttc 87
||||||||||||||||||||||||
Sbjct: 56 aagatcagatcatgtggcagtttc 79
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttc 27
|||||||||||||||||||| ||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttc 40
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 agatcagatcatgtggcagtttc 87
|||||||||||||||||||||||
Sbjct: 58 agatcagatcatgtggcagtttc 80
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 agatcagatcatgtggcagtttc 87
|||||||||||||||||||||||
Sbjct: 58 agatcagatcatgtggcagtttc 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttc 27
|||||||||||||||||||| ||||||
Sbjct: 14 tgaagctgccagcatgatctcaacttc 40
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctta 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctta 35
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctgaactt 39
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
