miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 285 bits (144), Expect = 8e-77
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 1 accaagcatgaggcaacaactgcagtacttgtggggaaggcacaagtaggacaccaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 accaagcatgaggcaacaactgcagtacttgtggggaaggcacaagtaggacaccaacat 73
Query: 61 tacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtggctttcttgcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtggctttcttgcaag 133
Query: 121 tcgtgcagttgctgcctcaagctt 144
||||||||||||||||||||||||
Sbjct: 134 tcgtgcagttgctgcctcaagctt 157
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 77.8 bits (39), Expect = 4e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 98 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagctt 223
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 102 cttgtggctttcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgctt 7
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 77.8 bits (39), Expect = 4e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 98 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 105 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagctt 151
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 109 ctttcttgcaagtcgtgcagttgctgcctcaagctt 144
||||||||||||| ||||||||| ||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagctt 149
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 111 ttcttgcaagtcgtgcagttgctgcctcaagctt 144
||||||||||| |||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagctt 113
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 112 tcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||||||| |||||||||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagctt 113
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 100 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgctt 17
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||||||||| ||||||||| || |||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagctt 112
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 110 tttcttgcaagtcgtgcagttgctgcctcaagctt 144
|||||||||||| ||||||||| || |||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagctt 114
