miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF343492.1/1298-1206 58531:Aegilops speltoides
subsp. speltoides
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 13 ccataaaataaggacatttttgacactatactaggggcaaaaacgcttttatattatgag 72
|||||| ||||| || ||||| |||||| ||| | ||||||||||||||||||||| |
Sbjct: 18 ccataatataagaacgttttttacactagtgtagtgtcaaaaacgcttttatattatggg 77
Query: 73 acggagggagt 83
|||||||||||
Sbjct: 78 acggagggagt 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 29 tttttgacactatactaggggcaaaaacgcttttatattatgagacggagggag 82
|||||||||||| ||||| | ||||||| | |||||||||| |||||||||||
Sbjct: 60 tttttgacactacactagtgtaaaaaacgttcttatattatgggacggagggag 7
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 29 tttttgacactatactaggggcaaaaacgcttttatattatgagacggaggga 81
||||||||||| ||||| | |||||||||| |||||||||| ||||||||||
Sbjct: 60 tttttgacactgcactagtgtcaaaaacgctcttatattatgggacggaggga 8
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 caaaaacgcttttatattatgagacggagggagt 83
|||||||||| |||||||||| ||||||||||||
Sbjct: 55 caaaaacgctcttatattatgggacggagggagt 88
>RF00906;MIR1122;EU626553.1/26077-25985 4572:Triticum urartu
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 13 ccataaaataaggacatttttgacactatactaggggcaaaaacgcttttatattatgag 72
|||||| ||||| || |||||| ||||| ||||| | || ||||| | |||||||||| |
Sbjct: 18 ccataatataagaacgtttttggcactacactagtgtcagaaacgttcttatattatggg 77
Query: 73 acggagggagt 83
|||||||||||
Sbjct: 78 acggagggagt 88
>RF00906;MIR1122;EU835198.1/120580-120672 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 13 ccataaaataaggacatttttgacactatactaggggcaaaaacgcttttatattatgag 72
|||||| ||||| ||||||||||||||| || || | |||||| ||| ||||||||||
Sbjct: 76 ccataatataagaacatttttgacactacaccagtgccaaaaatgctcttatattatgga 17
Query: 73 acggagggagt 83
|| ||||||||
Sbjct: 16 acagagggagt 6
>RF00906;MIR1122;AY013246.1/69877-69969 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 13 ccataaaataaggacatttttgacactatactaggggcaaaaacgcttttatattatgag 72
|||||| ||||| ||||||||||| || ||| | |||||||||| ||||||||||||
Sbjct: 76 ccataatataagagcatttttgacattagtgtagtgtcaaaaacgctcttatattatgag 17
Query: 73 acggagggagt 83
|| ||||||||
Sbjct: 16 acagagggagt 6
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 29 tttttgacactatactaggggcaaaaacgcttttatattatgagacggagggagt 83
|||||||||||| |||| | |||||| ||| |||||||||| ||||||||||||
Sbjct: 34 tttttgacactacactaatgtcaaaaatgctcttatattatgggacggagggagt 88
>RF01058;MIR806;AACV01002156.1/2447-2686 39947:Oryza sativa Japonica
Group
Length = 240
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 cttttatattatgagacggagggagt 83
||||||||||||||||||||||||||
Sbjct: 213 cttttatattatgagacggagggagt 238
>RF00906;MIR1122;EF067844.1/466927-467019 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 caaaaacgcttttatattatgagacggagggagt 83
|||||||| |||||||||||||||||||| ||||
Sbjct: 55 caaaaacgtttttatattatgagacggagagagt 88
>RF00906;MIR1122;AJ234502.1/104-174 4513:Hordeum vulgare
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 caaaaacgcttttatattatgagacggagggagt 83
|||||||||| |||||||||| ||||||||||||
Sbjct: 33 caaaaacgctcttatattatgggacggagggagt 66
>RF00906;MIR1122;FJ374604.1/80-162 4573:Aegilops speltoides
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 50 caaaaacgcttttatattatgagacggagggagt 83
|||||||||| |||||||||| ||||||||||||
Sbjct: 39 caaaaacgctcttatattatgggacggagggagt 6
>RF00906;MIR1122;AC140005.2/42932-42813 39947:Oryza sativa
Japonica Group
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 60 tttatattatgagacggagggagt 83
||||||||||||||||||||||||
Sbjct: 29 tttatattatgagacggagggagt 6
>RF01058;MIR806;AAAA02017215.1/4773-5008 39946:Oryza sativa Indica
Group
Length = 236
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 25 ttatattatgagacggagggagt 3
>RF01058;MIR806;AAAA02030884.1/12329-12088 39946:Oryza sativa
Indica Group
Length = 242
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 25 ttatattatgagacggagggagt 3
>RF01058;MIR806;AACV01010328.1/26487-26725 39947:Oryza sativa
Japonica Group
Length = 239
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 215 ttatattatgagacggagggagt 237
>RF00906;MIR1122;AACV01024996.1/33659-33776 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 91 ttatattatgagacggagggagt 113
>RF00906;MIR1122;AAAA02004418.1/2515-2382 39946:Oryza sativa
Indica Group
Length = 134
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 28 ttatattatgagacggagggagt 6
>RF00906;MIR1122;AAAA02005800.1/23183-23322 39946:Oryza sativa
Indica Group
Length = 140
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 113 ttatattatgagacggagggagt 135
>RF00906;MIR1122;AP008209.1/29433794-29433644 39947:Oryza sativa
Japonica Group
Length = 151
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 28 ttatattatgagacggagggagt 6
>RF00906;MIR1122;AC130604.4/103163-103007 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 130 ttatattatgagacggagggagt 152
>RF00906;MIR1122;AP005383.3/77876-77739 39947:Oryza sativa
Japonica Group
Length = 138
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 28 ttatattatgagacggagggagt 6
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ttatattatgagacggagggagt 83
|||||||||||||||||||||||
Sbjct: 111 ttatattatgagacggagggagt 133
>RF00906;MIR1122;AC025905.3/47917-48072 4530:Oryza sativa (rice)
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 tatattatgagacggagggagt 83
||||||||||||||||||||||
Sbjct: 27 tatattatgagacggagggagt 6
>RF00906;MIR1122;AC137589.2/147211-147089 39947:Oryza sativa
Japonica Group
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 tatattatgagacggagggagt 83
||||||||||||||||||||||
Sbjct: 27 tatattatgagacggagggagt 6
