miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaactttcttctc 31
|||||||||||||||||||||||| ||||||
Sbjct: 16 aagctgccagcatgatctaaacttccttctc 46
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaactttc 26
||||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaactttc 41
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaactttc 26
||||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaactttc 41
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaacttt 25
|||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaactttcttc 29
|||||||||||||||||||||||| ||||
Sbjct: 16 aagctgccagcatgatctaaacttgcttc 44
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaactt 24
||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaactttc 26
|||||||||||||||||| |||||||
Sbjct: 16 aagctgccagcatgatctgaactttc 41
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaa 21
|||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaa 21
|||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaa 21
|||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaa 36
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctaaacttt 25
|||||||||||||||||||| ||||
Sbjct: 16 aagctgccagcatgatctaagcttt 40
