miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 gatgccgtcggaccaggcttcattccc 76
|||| ||||||||||||||||||||||
Sbjct: 90 gatgacgtcggaccaggcttcattccc 116
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 109 cgtcggaccaggcttcattccc 130
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 95 cgtcggaccaggcttcattccc 116
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 118 cgtcggaccaggcttcattccc 139
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 98 cgtcggaccaggcttcattccc 119
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 94 cgtcggaccaggcttcattccc 115
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 106 cgtcggaccaggcttcattccc 127
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 129 cgtcggaccaggcttcattccc 150
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattccc 76
||||||||||||||||||||||
Sbjct: 123 cgtcggaccaggcttcattccc 144
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattccc 103
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 72 gtcggaccaggcttcattccc 92
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 75 gtcggaccaggcttcattccc 95
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 108 gtcggaccaggcttcattccc 128
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 129 gtcggaccaggcttcattccc 149
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 87 gtcggaccaggcttcattccc 107
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 122 gtcggaccaggcttcattccc 142
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 gtcggaccaggcttcattccc 76
|||||||||||||||||||||
Sbjct: 161 gtcggaccaggcttcattccc 181
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tgccgtcggaccaggcttcattccc 76
|||| ||||||||||||||||||||
Sbjct: 120 tgccctcggaccaggcttcattccc 144
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattcc 75
|||||||||||||||||||||
Sbjct: 83 cgtcggaccaggcttcattcc 103
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 cgtcggaccaggcttcattcc 75
|||||||||||||||||||||
Sbjct: 82 cgtcggaccaggcttcattcc 102
