miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 85.7 bits (43), Expect = 7e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatcctctaagctcatcgaccattgatgacctccgtgaatg 60
|||||||||||||||||||||| || ||| |||||| || ||||||||||||| |||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagtatcgatgacctccgtggatg 63
Query: 61 gcgtatgaggagccatgca 79
|||||||||||||||||||
Sbjct: 64 gcgtatgaggagccatgca 82
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatcctctaagctcatcgaccattgatgacctccgtgaatg 60
|||||||||||||||||||||| | ||| || ||| ||| | || |||||||| |||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccgagcatcgctggcctccgtggatg 63
Query: 61 gcgtatgaggagccatgca 79
|||||||||||||||||||
Sbjct: 64 gcgtatgaggagccatgca 82
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 gatgacctccgtgaatggcgtatgaggagccatgca 79
|||| |||||||| ||||||||||||||||||||||
Sbjct: 48 gatggcctccgtggatggcgtatgaggagccatgca 83
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 44 gatgacctccgtgaatggcgtatgaggagccatgca 79
|||| ||| |||| ||||||||||||||||||||||
Sbjct: 48 gatggccttcgtggatggcgtatgaggagccatgca 83
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatc 23
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatc 26
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
