miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcagatcttcc 29
||||||||||||||||| |||||||||||
Sbjct: 11 gatattggcctggttcactcagatcttcc 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 tctcttagatatctgattgagccgcgtcaatatc 83
||||| || ||||||||||||||||| |||||||
Sbjct: 64 tctctcagttatctgattgagccgcgccaatatc 97
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctgattgagccgcgtcaatatc 83
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgcgtcaatatc 92
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcagatctt 27
||||||||||||||||| |||||||||
Sbjct: 11 gatattggcctggttcactcagatctt 37
