miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactggcttagaaactaatctatcaatagattagctacggcg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 5 gcctggctccctgtatgccactggcttagaaactaatctaccaatagattatctacggcg 64
Query: 61 ggtggcgtgcgaggagccaagc 82
||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gcgggtggcgtgcgaggagccaagc 82
|||||||||||||||||||||||||
Sbjct: 62 gcgggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactggcttag 29
|||||||||||||||||||||| ||||||
Sbjct: 5 gcctggctccctgtatgccactcgcttag 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ctacggcgggtggcgtgcgaggagccaagc 82
|||| |||| ||||||||||||||||||||
Sbjct: 73 ctactgcggatggcgtgcgaggagccaagc 102
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ggtggcgtgcgaggagccaagc 82
||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcgaggagccaagc 84
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ggtggcgtgcgaggagccaagc 82
||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ggtggcgtgcgaggagccaagc 82
||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ggtggcgtgcgaggagccaagc 82
||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ctacggcgggtggcgtgcgaggagccaagc 82
|||| |||| ||||||||||||||||||||
Sbjct: 103 ctactgcggatggcgtgcgaggagccaagc 132
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26