miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score =  147 bits (74), Expect = 2e-35
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcctggctccctgtatgccactggcttagaaactaatctatcaatagattagctacggcg 60
          |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 5  gcctggctccctgtatgccactggcttagaaactaatctaccaatagattatctacggcg 64

                                
Query: 61 ggtggcgtgcgaggagccaagc 82
          ||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 58 gcgggtggcgtgcgaggagccaagc 82
          |||||||||||||||||||||||||
Sbjct: 62 gcgggtggcgtgcgaggagccaagc 86




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
          (sorghum)
          Length = 106

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 1  gcctggctccctgtatgccactggcttag 29
          |||||||||||||||||||||| ||||||
Sbjct: 5  gcctggctccctgtatgccactcgcttag 33



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 53  ctacggcgggtggcgtgcgaggagccaagc 82
           |||| |||| ||||||||||||||||||||
Sbjct: 73  ctactgcggatggcgtgcgaggagccaagc 102




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 ggtggcgtgcgaggagccaagc 82
          ||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcgaggagccaagc 84




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 ggtggcgtgcgaggagccaagc 82
          ||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 ggtggcgtgcgaggagccaagc 82
          ||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 ggtggcgtgcgaggagccaagc 82
          ||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 53  ctacggcgggtggcgtgcgaggagccaagc 82
           |||| |||| ||||||||||||||||||||
Sbjct: 103 ctactgcggatggcgtgcgaggagccaagc 132




>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gcctggctccctgtatgccact 22
          ||||||||||||||||||||||
Sbjct: 5  gcctggctccctgtatgccact 26