miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 210 bits (106), Expect = 5e-54
Identities = 161/181 (88%), Gaps = 3/181 (1%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 13 gagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgga 72
Query: 61 tcccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcata 120
|||||||||||||||||||| || || |||||||||||||||| |||||||
Sbjct: 73 tcccataagccctaatccttgtaaag---taaaaaaggatttggttatatggattgcata 129
Query: 121 tcttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 130 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 189
Query: 181 c 181
|
Sbjct: 190 c 190
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 85.7 bits (43), Expect = 2e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||| ||| |||||| ||||| ||| |||||||||||||||||||
Sbjct: 13 gagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgga 72
Query: 61 tcccataagcc 71
|||||||||||
Sbjct: 73 tcccataagcc 83
Score = 60.0 bits (30), Expect = 1e-08
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 117 catatcttaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 175
||||||| ||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 176 gagctc 181
||||||
Sbjct: 189 gagctc 194
>RF00638;MIR159;AC172875.2/71149-71331 51351:Brassica rapa subsp.
pekinensis
Length = 183
Score = 44.1 bits (22), Expect = 7e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 108 tatggcttgcatatcttaggagctttaacttgccctttaattgcttttactcttctttgg 167
||||| || |||||||| |||| ||| ||||||||||| | || || ||||||||||||
Sbjct: 97 tatggattccatatctttggagttttcacttgcccttttaatgacttcactcttctttgg 156
Query: 168 at 169
||
Sbjct: 157 at 158
