miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 88 tggctctactgcggatggcgtgcgaggagccaagc 122
|||||||||||||||||||||||||||||||||||
Sbjct: 68 tggctctactgcggatggcgtgcgaggagccaagc 102
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcgcgtagctgcca 35
||||||||||||||||||||||||| |||||||||
Sbjct: 5 gcctggctccctgtatgccactcgcttagctgcca 39
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcgcgtagctgcca 35
|||||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcgcgtagctgcca 39
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 88 tggctctactgcggatggcgtgcgaggagccaagc 122
|||||||||||||||||||||||||||||||||||
Sbjct: 98 tggctctactgcggatggcgtgcgaggagccaagc 132
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 88 tggctctactgcggatggcgtgcgaggagccaa 120
|||||| ||||||||||||||||||||||||||
Sbjct: 65 tggctccactgcggatggcgtgcgaggagccaa 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 ctggctccctgtatgccactcgcgtagctgcca 35
||||||||||||||||||||||| | |||||||
Sbjct: 1 ctggctccctgtatgccactcgcatggctgcca 33
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcgc 29
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcgc 29
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcgcgtagctgcca 35
||||||||||||||||||| ||||| | |||||||
Sbjct: 5 gcctggctccctgtatgccgctcgcatggctgcca 39
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 92 tctactgcggatggcgtgcgaggagccaagc 122
||||| |||| ||||||||||||||||||||
Sbjct: 56 tctacggcgggtggcgtgcgaggagccaagc 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 gcggatggcgtgcgaggagcca 119
||||||||||||||||||||||
Sbjct: 58 gcggatggcgtgcgaggagcca 79
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 tgcggatggcgtgcgaggagccaagc 122
||||| ||||||||||||||||||||
Sbjct: 61 tgcgggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
