miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 118 tagtgtcgtcggaccaggcttcattccc 145
||||||||||||||||||||||||||||
Sbjct: 103 tagtgtcgtcggaccaggcttcattccc 130
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 118 tagtgtcgtcggaccaggcttcattccc 145
||||||||||||||||||||||||||||
Sbjct: 89 tagtgtcgtcggaccaggcttcattccc 116
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 119 agtgtcgtcggaccaggcttcattccc 145
|||||||||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattccc 127
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 120 gtgtcgtcggaccaggcttcattccc 145
||||||||||||||||||||||||||
Sbjct: 125 gtgtcgtcggaccaggcttcattccc 150
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 120 gtgtcgtcggaccaggcttcattccc 145
||||||||||||||||||||||||||
Sbjct: 119 gtgtcgtcggaccaggcttcattccc 144
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 122 gtcgtcggaccaggcttcattccc 145
||||||||||||||||||||||||
Sbjct: 96 gtcgtcggaccaggcttcattccc 119
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 118 tagtgtcgtcggaccaggcttcattccc 145
||||| ||||||||||||||||||||||
Sbjct: 88 tagtgacgtcggaccaggcttcattccc 115
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 118 tagtgtcgtcggaccaggcttcattccc 145
|||||| |||||||||||||||||||||
Sbjct: 115 tagtgttgtcggaccaggcttcattccc 142
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 118 tagtgtcgtcggaccaggcttcattccc 145
|||||| |||||||||||||||||||||
Sbjct: 154 tagtgttgtcggaccaggcttcattccc 181
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 119 agtgtcgtcggaccaggcttcattccc 145
||||| |||||||||||||||||||||
Sbjct: 81 agtgttgtcggaccaggcttcattccc 107
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 cgtcggaccaggcttcattccc 145
||||||||||||||||||||||
Sbjct: 95 cgtcggaccaggcttcattccc 116
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 cgtcggaccaggcttcattccc 145
||||||||||||||||||||||
Sbjct: 118 cgtcggaccaggcttcattccc 139
