miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 ctcgaagctatgtgtgctcactctctatctg 80
|||||||||||||||||||||||||||||||
Sbjct: 52 ctcgaagctatgtgtgctcactctctatctg 82
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 47 atgctcgaagctatgtgtgctcactctctatc 78
||||| ||||||||||||||||||||||||||
Sbjct: 55 atgcttgaagctatgtgtgctcactctctatc 86
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacccatggtcttttcctgcat 36
||||||||||||||||| |||||| ||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtactttcctgcat 40
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacccatggtcttttcctgcat 36
||||||||||||||||| |||||||| ||| |||||
Sbjct: 5 cagaagagagtgagcacacatggtctgttcttgcat 40
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacccatgg 23
|||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacccatgg 27
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2 agaagagagtgagcacccatggtcttttcctgcat 36
|||||||||||||||| |||||| ||||| |||||
Sbjct: 6 agaagagagtgagcacacatggtgttttcttgcat 40
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 46 tatgctcgaagctatgtgtgctcactctctatctg 80
|||||| ||| ||||||||||| ||||||||||||
Sbjct: 57 tatgcttgaaactatgtgtgcttactctctatctg 91
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 47 atgctcgaagctatgtgtgctcactctctatctg 80
||||| ||||||||||||||| ||||||| ||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctg 94
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacccatggtcttttc 30
||||||||||||||||| |||||| |||||
Sbjct: 5 cagaagagagtgagcacacatggtgttttc 34
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacccatggtcttttc 30
||||||||||||||||| |||||||||||
Sbjct: 5 cagaagagagtgagcacatatggtcttttc 34
