miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 64
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 22 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 80
Query: 65 tgcactgcctcttccctggct 85
|||||||||||||||||||||
Sbjct: 81 tgcactgcctcttccctggct 101
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 3 ctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcact 62
|||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||
Sbjct: 20 ctgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacc 79
Query: 63 catgcactgcctcttccctggct 85
| |||||||||||||||||||||
Sbjct: 80 cctgcactgcctcttccctggct 102
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 47 ctgttttggcttcactcatgcactgcctcttccctggct 85
||||| ||||| |||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 46 tctgttttggcttcactcatgcactgcctcttccctggct 85
|||||| ||||| | |||||||||||||||||||||||||
Sbjct: 100 tctgttgtggctacgctcatgcactgcctcttccctggct 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1 ggctgggaacaggcagagcatggatgcagctattaacagaaa 42
|||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 19 ggctgggaacaggcagggcacgaatggagctatcaacagaaa 60
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 actcatgcactgcctcttccctggc 84
|||||||||||||||||||||||||
Sbjct: 94 actcatgcactgcctcttccctggc 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatgcagctattaaca 38
||||| |||||||||||||||| |||||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagctatcaaca 56
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 catgcactgcctcttccctggct 85
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 catgcactgcctcttccctggct 85
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggctgggaacaggcagagcatggatg 26
||||||||| ||||||||||||||||
Sbjct: 19 ggctgggaagaggcagagcatggatg 44
