miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 65.9 bits (33), Expect = 2e-10
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatgga 59
||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga 71
Query: 60 ttccacagtccta 72
||||||||||||
Sbjct: 72 -tccacagtccta 83
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 ggataggcttgcggcttgcatatgttaggagcttt 126
||||||| ||||||||||||||| | |||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagcttt 131
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 60.0 bits (30), Expect = 1e-08
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 107 ttgcatatgttaggagcttt--tttacctctttgttttatctttctttggattgaaggga 164
|||||||||| ||||||||| |||||| |||||||| ||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 182
Query: 165 gctct 169
|||||
Sbjct: 183 gctct 187
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 58.0 bits (29), Expect = 4e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 101 tgcggcttgcatatgttaggagcttttttacctctttgttttatctttctttggattgaa 160
|||||||||||||| | ||||||||| |||||| | ||| |||||| |||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaa 156
Query: 161 gggagctct 169
|||||||||
Sbjct: 157 gggagctct 165
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaaaagagga-tttgcagggtaaatcaagctgctaatctatggat 60
|||||||||||||||||| |||||| |||||||||| || |||||| | ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 tccacagtccta 72
||||||| ||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 92 ggataggcttgcggcttgcatatgttaggagcttttttacctctttgttttatctttctt 151
||||||||||| ||||||||||| | |||||||| |||||| | | || ||| || ||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 163
Query: 152 tggattgaagggagctct 169
||||||||||||||||||
Sbjct: 164 tggattgaagggagctct 181
Score = 50.1 bits (25), Expect = 1e-05
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatgga 59
||||||||||||||||||| ||||||| ||| ||||| || ||||||| | |||||||
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 60 ttccacagtccta 72
| |||||| ||||
Sbjct: 72 tcccacagcccta 84
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 147 ttctttggattgaagggagctct 169
|||||||||||||||||||||||
Sbjct: 173 ttctttggattgaagggagctct 195
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 147 ttctttggattgaagggagctct 169
|||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctct 191
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tctttggattgaagggagctct 169
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261