miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggtccgagacctaacaccgggcggaatggcggattcagctgcagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggtccgagacctaacaccgggcggaatggcggattcagctgcagcta 66
Query: 61 agcaagctaggtggggggtttcggaccaggcttcattccc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agcaagctaggtggggggtttcggaccaggcttcattccc 106
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggtccgagacctaacaccg 32
||||||||||||||||| ||||||||||||||
Sbjct: 7 gggaatgttgtctggtcggagacctaacaccg 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 ggtttcggaccaggcttcattccc 100
||||||||||||||||||||||||
Sbjct: 75 ggtttcggaccaggcttcattccc 98
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tggggggtttcggaccaggcttcattcc 99
|||||||| |||||||||||||||||||
Sbjct: 82 tggggggtctcggaccaggcttcattcc 109
>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gtttcggaccaggcttcattccc 100
|||||||||||||||||||||||
Sbjct: 60 gtttcggaccaggcttcattccc 82
>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gtttcggaccaggcttcattccc 100
|||||||||||||||||||||||
Sbjct: 67 gtttcggaccaggcttcattccc 89
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tttcggaccaggcttcattccc 100
||||||||||||||||||||||
Sbjct: 66 tttcggaccaggcttcattccc 87
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tttcggaccaggcttcattccc 100
||||||||||||||||||||||
Sbjct: 70 tttcggaccaggcttcattccc 91
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tttcggaccaggcttcattccc 100
||||||||||||||||||||||
Sbjct: 66 tttcggaccaggcttcattccc 87
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tttcggaccaggcttcattccc 100
||||||||||||||||||||||
Sbjct: 70 tttcggaccaggcttcattccc 91
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tttcggaccaggcttcattccc 100
||||||||||||||||||||||
Sbjct: 63 tttcggaccaggcttcattccc 84
>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tttcggaccaggcttcattccc 100
||||||||||||||||||||||
Sbjct: 52 tttcggaccaggcttcattccc 73
