miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus trichocarpa
Length = 210
Score = 240 bits (121), Expect = 6e-63
Identities = 170/186 (91%), Gaps = 4/186 (2%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtagcctccctcggattcaagaacacgagcatttatgcagt 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 14 agccaaggatgacttgcctgtagcctccctcggattcatgaacacgagcatttatgtggt 73
Query: 61 gctcaaaagaaaaggagagaatgatcccagcttgctgcgcgctacaaggtcaatccatgg 120
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
Sbjct: 74 gctcaaaagaaaaggagagaatgatcccagctggcagcg----acaaggtcaatccattg 129
Query: 121 aagcagcgagaagaaggtggtttatagctagaatcctcatgaggttcacagcaagtgtcc 180
||| ||||||||| ||||| |||||||||||||||| || ||||||| ||||||||||||
Sbjct: 130 aagtagcgagaagcaggtgatttatagctagaatccacaagaggttcccagcaagtgtcc 189
Query: 181 ttggct 186
||||||
Sbjct: 190 ttggct 195
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtagcctcc 28
||||||||||||||||||||| ||||||
Sbjct: 112 agccaaggatgacttgcctgtggcctcc 85
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtagcctcc 28
||||||||||||||||||||| ||||||
Sbjct: 127 agccaaggatgacttgcctgtggcctcc 100
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtagcctcc 28
||||||||||||||||||||| ||||||
Sbjct: 15 agccaaggatgacttgcctgtggcctcc 42
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtagcctcc 28
||||||||||||||||||||| ||||||
Sbjct: 17 agccaaggatgacttgcctgtggcctcc 44
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtagcctc 27
||||||||||||||||||||| |||||
Sbjct: 132 agccaaggatgacttgcctgtggcctc 106
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtagcctc 27
||||||||||||||||||||| |||||
Sbjct: 154 agccaaggatgacttgcctgtggcctc 128
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtagcctc 27
||||||||||||||||||||| |||||
Sbjct: 14 agccaaggatgacttgcctgtggcctc 40
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtagcctc 27
||||||||||||||||||||| |||||
Sbjct: 14 agccaaggatgacttgcctgtggcctc 40
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtagcctccct 30
||||||||||||||||||||| |||||||
Sbjct: 107 agccaaggatgacttgcctgtgtcctccct 78
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgta 22
||||||||||||||||||||||
Sbjct: 136 agccaaggatgacttgcctgta 115
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtagcctccct 30
||||||||||||||||||||| |||||||
Sbjct: 11 agccaaggatgacttgcctgtgtcctccct 40
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgta 22
||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctgta 35
