miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 73.8 bits (37), Expect = 6e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 60 ctatgtatctggacatagcgtatatctaggtgcttagc-aagtctatgtacttagaaaaa 118
|||||||||| ||||||||||||||||||||||||||| || |||||||| ||| |||
Sbjct: 35 ctatgtatctagacatagcgtatatctaggtgcttagcaaaagctatgtacctaggaaag 94
Query: 119 ccaaaacgactta 131
|||||| ||||||
Sbjct: 95 ccaaaatgactta 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 102 ctatgtacttagaaaaaccaaaacgactta 131
|||||||| ||||||| |||||||||||||
Sbjct: 30 ctatgtacctagaaaagccaaaacgactta 1
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 119 ccaaaacgacttacattttggaacggagggagta 152
||||||||||||||| ||||||||||||||||||
Sbjct: 38 ccaaaacgacttacaatttggaacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 114 aaaaaccaaaacgacttacattttggaacggaggga 149
|||| |||||||||||| ||||||||||||||||||
Sbjct: 110 aaaagccaaaacgacttgcattttggaacggaggga 145
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 110 ttagaaaaaccaaaacgacttacattttggaacggagggagtat 153
|||||||| |||||||| |||||| ||||||| |||||||||||
Sbjct: 47 ttagaaaagccaaaacgtcttacaatttggaatggagggagtat 4
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 102 ctatgtacttagaaaaaccaaaacgacttacattttggaacggagggagtat 153
|||||||| |||| || |||||| |||||||| ||||||| |||||||||||
Sbjct: 62 ctatgtacctagagaagccaaaatgacttacaatttggaatggagggagtat 113
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 111 tagaaaaaccaaaacgacttacattttggaacggagggagtat 153
||||||| ||| ||||||||| | |||||||||||||||||||
Sbjct: 46 tagaaaagccagaacgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 111 tagaaaaaccaaaacgacttacattttggaacggagggagta 152
|||||||||||||| | |||| | ||||||||||||||||||
Sbjct: 103 tagaaaaaccaaaatgtcttataatttggaacggagggagta 144
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 101 tctatgtacttagaaaaaccaaaacgacttacattttggaacggagggagta 152
|||||||| |||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 56 tctatgtatctagaaatgccaaaacaccttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 111 tagaaaaaccaaaacgacttacattttggaacggagggagta 152
||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 46 tagaaaagccaaaacatcttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 123 aacgacttacattttggaacggagggagta 152
||||||||||| ||||||||||||||||||
Sbjct: 34 aacgacttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 113 gaaaaaccaaaacgacttacattttggaacggagggagtat 153
|||||||||||||| |||| | |||||||| ||||||||||
Sbjct: 44 gaaaaaccaaaacgtcttataatttggaacagagggagtat 4
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 50.1 bits (25), Expect = 9e-06
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 58 tactatgtatctggacatagcgtatatctaggtgcttagcaagt-ctatgtacttagaaa 116
||||||| |||| |||||||||| |||||| |||| |||||| | ||| | ||||||
Sbjct: 63 tactatgcatctagacatagcgtgtatctaagtgcatagcaaaagccatgaatctagaaa 122
Query: 117 aaccaaaacgacttacattttggaacggagggagtat 153
| |||||||| |||| | ||||||| |||||||||||
Sbjct: 123 acccaaaacgtcttataatttggaatggagggagtat 159
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 111 tagaaaaaccaaaacgacttacattttggaacggagggagta 152
||||||| |||||||| |||| | | ||||||||||||||||
Sbjct: 46 tagaaaagccaaaacgtcttataatgtggaacggagggagta 5
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 120 caaaacgacttacattttggaacggagggagta 152
|||||||||||| | ||||||||||||||||||
Sbjct: 37 caaaacgacttataatttggaacggagggagta 5
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 121 aaaacgacttacattttggaacggagggagtat 153
|||| ||||||||||| ||||||||||||||||
Sbjct: 34 aaaaagacttacatttaggaacggagggagtat 2
>RF00906;MIR1122;AAAA02035929.1/12415-12280 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 126 gacttacattttggaacggagggagtat 153
|||||||||| |||||||||||||||||
Sbjct: 31 gacttacattgtggaacggagggagtat 4
>RF00906;MIR1122;AP005467.3/75230-75071 39947:Oryza sativa Japonica
Group
Length = 160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 126 gacttacattttggaacggagggagta 152
|||||||||| ||||||||||||||||
Sbjct: 130 gacttacattgtggaacggagggagta 156
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 cttacattttggaacggagggagtat 153
|||| |||||||||||||||||||||
Sbjct: 94 cttatattttggaacggagggagtat 119
>RF00906;MIR1122;AC152348.7/114834-114678 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 cttacattttggaacggagggagtat 153
|||| |||||||||||||||||||||
Sbjct: 129 cttatattttggaacggagggagtat 154
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 acttacattttggaacggagggagta 152
||||| ||||||||||||||||||||
Sbjct: 30 acttatattttggaacggagggagta 5
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 128 cttacattttggaacggagggagtat 153
|||||||||||| |||||||||||||
Sbjct: 29 cttacattttgggacggagggagtat 4
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 cttacattttggaacggagggagtat 153
|||||||||||| |||||||||||||
Sbjct: 109 cttacattttgggacggagggagtat 134
>RF00906;MIR1122;AC140029.19/78088-78242 3880:Medicago truncatula
(barrel medic)
Length = 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 cttacattttggaacggagggagtat 153
|||| |||||||||||||||||||||
Sbjct: 127 cttatattttggaacggagggagtat 152
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 119 ccaaaacgacttacattttggaacggagggagta 152
|||||||| |||| | ||||||||||||||||||
Sbjct: 72 ccaaaacgtcttataatttggaacggagggagta 105
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 120 caaaacgacttacattttggaacggagggagtat 153
|||| ||||||| | |||||||||||||||||||
Sbjct: 37 caaagcgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 119 ccaaaacgacttacattttggaacggagggagta 152
|||||||| |||| | ||||||||||||||||||
Sbjct: 120 ccaaaacgtcttatagtttggaacggagggagta 153
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 119 ccaaaacgacttacattttggaacggagggagta 152
|||||||| |||| | ||||||||||||||||||
Sbjct: 78 ccaaaacgtcttataatttggaacggagggagta 111
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 120 caaaacgacttacattttggaacggagggagtat 153
|||| ||||||| | |||||||||||||||||||
Sbjct: 37 caaagcgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 cttacattttggaacggagggagtat 153
|||| |||||||||||||||||||||
Sbjct: 139 cttatattttggaacggagggagtat 164
>RF00906;MIR1122;AP008215.1/20036672-20036557 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 acttacattttggaacggagggagta 152
||||||||||||| ||||||||||||
Sbjct: 30 acttacattttgggacggagggagta 5
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 127 acttacattttggaacggagggagta 152
||||||||||||| ||||||||||||
Sbjct: 76 acttacattttgggacggagggagta 101
>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 128 cttacattttggaacggagggagtat 153
|||||||||||| |||||||||||||
Sbjct: 29 cttacattttgggacggagggagtat 4
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 127 acttacattttggaacggagggagta 152
||||||||||||| ||||||||||||
Sbjct: 76 acttacattttgggacggagggagta 101
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 cttacattttggaacggagggagtat 153
|||| |||||||||||||||||||||
Sbjct: 67 cttatattttggaacggagggagtat 92
