miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 gatgccgtcggaccaggcttcattcc 74
|||| |||||||||||||||||||||
Sbjct: 90 gatgacgtcggaccaggcttcattcc 115
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 109 cgtcggaccaggcttcattcc 129
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 95 cgtcggaccaggcttcattcc 115
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 118 cgtcggaccaggcttcattcc 138
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 98 cgtcggaccaggcttcattcc 118
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 94 cgtcggaccaggcttcattcc 114
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 106 cgtcggaccaggcttcattcc 126
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 129 cgtcggaccaggcttcattcc 149
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 123 cgtcggaccaggcttcattcc 143
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 83 cgtcggaccaggcttcattcc 103
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgtcggaccaggcttcattcc 74
|||||||||||||||||||||
Sbjct: 82 cgtcggaccaggcttcattcc 102
