miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaactttcctt 29
|||||||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctgaactttcctt 44
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaactttcctt 29
|||||||||||||||||| ||||||||||
Sbjct: 16 aagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaactttcctt 29
|||||||||||||||||| ||||||||||
Sbjct: 16 aagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaacttt 25
|||||||||||||||||||| ||||
Sbjct: 16 aagctgccagcatgatctgagcttt 40
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaacttt 25
|||||||||||||||||| ||||||
Sbjct: 16 aagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaa 21
|||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctgaa 36
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaa 21
|||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctgaa 36
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctgaacttt 25
|||||||||||||||||||| ||||
Sbjct: 16 aagctgccagcatgatctgatcttt 40
