miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 87.7 bits (44), Expect = 5e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatg 60
|||||||||||||||||||| ||||| ||| | | ||||| |||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctgagctatg 69
Query: 61 gatcccacagtcctat 76
|||||||||| |||||
Sbjct: 70 gatcccacagccctat 85
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 114 gataggcttgtggcttgcatatttctggaccttcattacc 153
|||||||||||||||||||||| || ||| ||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacc 145
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 75.8 bits (38), Expect = 2e-13
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatg 60
|||||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatg 69
Query: 61 gatcccacagtcctatgtatca 82
||| |||||||||||| |||||
Sbjct: 70 gat-ccacagtcctatctatca 90
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 63.9 bits (32), Expect = 8e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatg 60
|||||||||||||||||||| ||||| ||| | ||||| ||||||||||||| ||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttact-gggtagattgagctgctgacttatg 69
Query: 61 gatcccacagtcctat 76
|||||||||| |||||
Sbjct: 70 gatcccacagccctat 85
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gataggcttgtggcttgcatat 135
||||||||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatat 127
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 62
|||||||||||||||||| ||||| | | ||| |||| |||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgca-gggttgattgagctgccgagctatgga 71
Query: 63 tcccacagtccta 75
| |||||| ||||
Sbjct: 72 ttccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatg 60
|||||||||||||||||||| ||| | |||| | ||| || ||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacctatg 69
Query: 61 gatcccacagtcctat 76
||| || ||| |||||
Sbjct: 70 gattcctcagccctat 85
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 62
|||||||||||||||||| ||| | || || ||||| || |||||||||||||||| |
Sbjct: 1 gagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatgaa 59
Query: 63 tcccacagtcctat 76
|||||||| |||||
Sbjct: 60 tcccacagccctat 73
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 35 agggtaaattgagctgctgagctatggatcccacagtcctat 76
|||| ||||||||||||||| ||||||||||| || ||||||
Sbjct: 44 agggaaaattgagctgctgatctatggatccctcaatcctat 85
