miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 64
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 65 accgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 5 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 64
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 65 accgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctgg 33
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 57 aacatgaaccgatcgataaacctctgcatccag 89
|||||||| ||||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctgg 33
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 catgaaccgatcgataaacctctgcatccag 89
|||||| ||||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctg 32
|||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 54 aaaaacatgaaccgatcgataaacctctgcatccag 89
|||| |||||| |||||||||||||||||||||||
Sbjct: 52 aaaagcatgaatagatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 aaacatgaaccgatcgataaacctctgcatccag 89
||||||||| || |||||||||||||||||||||
Sbjct: 56 aaacatgaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 gcagcggttcatcgatctcttcctg 32
|||||||||||||||||||||||||
Sbjct: 9 gcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 54 aaaaacatgaaccgatcgataaacctctgcatccag 89
|||| ||||||| ||||||||||||| |||||||||
Sbjct: 56 aaaagcatgaacagatcgataaacctgtgcatccag 91
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatccag 158
