miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 321 bits (162), Expect = 2e-87
Identities = 171/174 (98%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatggat 60
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 tcctcagccctatctatttatgatttcaaacatatagataggtttgtgggtttgcatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tcctcagccctatctatttatgatttcaaacatatagataggtttgtgggtttgcatatg 132
Query: 121 tcaggagctttattttaccctttgtttgatcattttttggattgaagggagctc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tcaggagctttattttaccctttgtttgatcattttttggattgaagggagctc 186
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 112 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 171
|||||||| |||||||||||||| ||| |||| |||| |||||||||||||||||||
Sbjct: 104 ttgcatatctcaggagctttatt--acctaatgttagatctttttttggattgaagggag 161
Query: 172 ctc 174
|||
Sbjct: 162 ctc 164
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 37 aaattgagctgctgacctatggattcctcagccctatctattt 79
||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 49 aaattgagctgctgatctatggatccctcaatcctatctattt 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 95 tagataggtttgtgggtttgcatatgtcaggagct 129
||||||||||||||| ||||||||| |||||||||
Sbjct: 104 tagataggtttgtgg-tttgcatatatcaggagct 137
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatggat 60
|||||||||||||||||| | | ||| || || || |||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 tcctcagccctatc 74
|| ||||||||||
Sbjct: 73 cccacagccctatc 86
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 39 attgagctgctgacctatggattcctcagccctat 73
||||||||||||| |||||||| || |||||||||
Sbjct: 51 attgagctgctgagctatggatcccacagccctat 85
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 39 attgagctgctgacctatggattcctcagcccta 72
|||||||||| || ||||||||||| ||||||||
Sbjct: 51 attgagctgccgagctatggattccacagcccta 84
