miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 69 attgagttagttcttcatgtgcccctcttcccca 102
||||||||||||||||||||||||||||||||||
Sbjct: 110 attgagttagttcttcatgtgcccctcttcccca 143
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||| ||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatactaactca 42
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactca 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 71 tgagttagttcttcatgtgcccctcttcccca 102
|||||||||| ||||||||||| |||||||||
Sbjct: 105 tgagttagtttttcatgtgcccatcttcccca 136
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactca 42
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 71 tgagttagttcttcatgtgcccctcttcccca 102
|||||||||||||||||||||| |||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttcccca 105
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactca 42
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 72 gagttagttcttcatgtgcccctcttcccca 102
|||||||||||||||||||| |||||||||
Sbjct: 117 gagttagttcttcatgtgcctgtcttcccca 147
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactca 42
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 gttagttcttcatgtgcccctcttcccca 102
||||||||||||||||||| |||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttcccca 114
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctca 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 tgagttagttcttcatgtgcccctcttc 98
|||||||||||||||||||||| |||||
Sbjct: 130 tgagttagttcttcatgtgcccatcttc 157
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctca 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 tgagttagttcttcatgtgcccctcttc 98
|||||||||||||||||||||| |||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttc 156
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctca 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 tgagttagttcttcatgtgcccctcttc 98
|||||||||||||||||||||| |||||
Sbjct: 128 tgagttagttcttcatgtgcccatcttc 155
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||| ||||||||||
Sbjct: 3 tggagaagcagggcacgtgcactactaactca 34
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 71 tgagttagttcttcatgtgcccctcttcccca 102
||||||||| ||||||||||||||||||||||
Sbjct: 254 tgagttagtgcttcatgtgcccctcttcccca 285
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||| | ||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactca 42
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattactagctca 42
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 72 gagttagttcttcatgtgcccctcttcccca 102
||||| |||||||||||||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttcccca 150
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattacta 27
|||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 73 agttagttcttcatgtgcccctcttcccca 102
||||||| ||||||||||||||||||||||
Sbjct: 251 agttagtacttcatgtgcccctcttcccca 280
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactca 32
||||||||||||||||||||| |||||||||
Sbjct: 11 tggagaagcagggcacgtgcaacactaactca 42
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattact 26
||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattact 36
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 ttagttcttcatgtgcccctctt 97
|||||||||||||||||||||||
Sbjct: 57 ttagttcttcatgtgcccctctt 79
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattactaactcaccaac 37
||||||||||||||||||||| | |||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactcatcaac 47
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattac 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattac 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcattac 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcatt 23
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcat 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcat 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcat 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
