miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 catggaagctcaagaaagctgtggga 87
||||||||||||||||||||||||||
Sbjct: 112 catggaagctcaagaaagctgtggga 137
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactttctt 25
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactttctt 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 tggaagctcaagaaagctgtggga 87
||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtggga 125
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gaagctcaagaaagctgtggga 87
||||||||||||||||||||||
Sbjct: 127 gaagctcaagaaagctgtggga 148
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactttcttg 26
||||||||||||||||||||| ||||
Sbjct: 11 ttccacagctttcttgaacttccttg 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 catggaagctcaagaaagctgtggga 87
||||||||||||||||||| ||||||
Sbjct: 121 catggaagctcaagaaagccgtggga 146
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gaagctcaagaaagctgtggga 87
||||||||||||||||||||||
Sbjct: 72 gaagctcaagaaagctgtggga 93
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gaagctcaagaaagctgtggga 87
||||||||||||||||||||||
Sbjct: 81 gaagctcaagaaagctgtggga 102
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttt 22
||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttt 32