miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 113 bits (57), Expect = 9e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 accacagccctat 73
||||||||||||
Sbjct: 73 cccacagccctat 85
Score = 109 bits (55), Expect = 1e-23
Identities = 75/81 (92%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 110 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 169
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagcttcattaccttgta---ttagatcct 159
Query: 170 tgtttggattgaagggagctc 190
|||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctc 180
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 9e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 accacagcccta 72
|||||||||||
Sbjct: 73 tccacagcccta 84
Score = 58.0 bits (29), Expect = 5e-08
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 115 taggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttgttt 174
|||||||| || ||||||||||| |||||| ||||||| || | ||| ||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattacccta--agctta-atccttgttt 164
Query: 175 ggattgaagggagctc 190
||||||||||||||||
Sbjct: 165 ggattgaagggagctc 180
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 95.6 bits (48), Expect = 2e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||| |||| | ||||||||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 accacagccctatccc 76
|||||||||||||||
Sbjct: 73 cccacagccctatccc 88
Score = 85.7 bits (43), Expect = 2e-16
Identities = 72/81 (88%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 110 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 169
|||||||||||||||||||||||||||| |||||| ||||| | | | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagctgcattatccaagt---ttagatcct 159
Query: 170 tgtttggattgaagggagctc 190
|||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctc 180
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 83.8 bits (42), Expect = 8e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||| | || ||| |||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 61 accacagccctatc 74
|||||||||||||
Sbjct: 61 cccacagccctatc 74
Score = 65.9 bits (33), Expect = 2e-10
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 124 ggcttgcatatctctggagcttcattaccttattatgttagatccttgtttggattgaag 183
|||||||||||||| ||||||| ||||||| || |||||||| || ||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaat---gttagatctttttttggattgaag 157
Query: 184 ggagctc 190
|||||||
Sbjct: 158 ggagctc 164
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 83.8 bits (42), Expect = 8e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
Query: 61 accacagccctatc 74
|||||| ||||||
Sbjct: 73 -ccacagtcctatc 85
Score = 65.9 bits (33), Expect = 2e-10
Identities = 68/79 (86%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 112 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 171
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 172 tttggattgaagggagctc 190
|||||||||||||||||||
Sbjct: 154 tttggattgaagggagctc 172
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 75.8 bits (38), Expect = 2e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||| ||| ||||| |||| |||||||||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 accacagccctatc 74
|| ||||||||||
Sbjct: 73 tcctcagccctatc 86
