miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 123 bits (62), Expect = 1e-27
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 123 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 182
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 139 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggact 198
Query: 183 gaagggagctccct 196
||||||||||||||
Sbjct: 199 gaagggagctccct 212
Score = 103 bits (52), Expect = 9e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 agagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcat 60
|||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||
Sbjct: 10 agagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcat 69
Query: 61 tcatccaaatgctgag 76
|||||||||| |||||
Sbjct: 70 tcatccaaatactgag 85
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 115 bits (58), Expect = 2e-25
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 123 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 182
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 106 cagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggact 165
Query: 183 gaagggagctccct 196
||||||||||||||
Sbjct: 166 gaagggagctccct 179
Score = 103 bits (52), Expect = 9e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 agagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcat 60
|||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||
Sbjct: 9 agagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcat 68
Query: 61 tcatccaaatgctgag 76
|||||||||| |||||
Sbjct: 69 tcatccaaatactgag 84
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 109 bits (55), Expect = 1e-23
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 122 tcagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggac 181
||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 93 tcagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggac 152
Query: 182 tgaagggagctccct 196
|||||||||||||||
Sbjct: 153 tgaagggagctccct 167
Score = 85.7 bits (43), Expect = 2e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 agagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcat 60
|||||||||||||||||||| ||||||||| || || |||||||||| |||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 61 tcatccaaatgctga 75
|||||||||||||||
Sbjct: 70 tcatccaaatgctga 84
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 107 bits (54), Expect = 6e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 123 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 182
|||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 99 cagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggact 158
Query: 183 gaagggagctccct 196
||||||||||||||
Sbjct: 159 gaagggagctccct 172
Score = 93.7 bits (47), Expect = 9e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 agagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgact-ca 59
|||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||
Sbjct: 10 agagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcca 69
Query: 60 ttcatccaaat 70
|||||||||||
Sbjct: 70 ttcatccaaat 80
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 101 bits (51), Expect = 4e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 130 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 189
||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct: 117 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaaggga 176
Query: 190 gctccct 196
|||||||
Sbjct: 177 gctccct 183
Score = 65.9 bits (33), Expect = 2e-10
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 agagagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactca 59
||||||||||||| |||||| |||||||| || || |||| ||||||||| | ||||||
Sbjct: 10 agagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactca 69
Query: 60 ttcatccaaatgctgag 76
|||||||||||| ||||
Sbjct: 70 ttcatccaaatgttgag 86
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 93.7 bits (47), Expect = 9e-19
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 121 ctcagtaactgagtgaatgatgcgggag-acaagttggatcttaagcttcctgtacttgg 179
||||| |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 180 actgaagggagctcc 194
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 58.0 bits (29), Expect = 5e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 4 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 63
|||||||||| |||||| ||||||| | |||| ||||||| ||| ||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 64 tccaaatgctgag 76
|||||||| ||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 67.9 bits (34), Expect = 5e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 123 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 182
|||||| ||| ||| ||||||||||||||| || ||||||| |||||| | |||||||
Sbjct: 104 cagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggact 163
Query: 183 gaagggagctccct 196
||||||||||||||
Sbjct: 164 gaagggagctccct 177
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 38 gattcaattagcttccgactcattcatccaaatgctgag 76
|||| |||||| | ||||||||||||||||||| |||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgag 85
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 38 gattcaattagcttccgactcattcatccaaat 70
|||||||||||||||||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 42 caattagcttccgactcattcatccaaat 70
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 42 caattagcttccgactcattcatccaaat 70
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 42 caattagcttccgactcattcatccaaat 70
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 caattagcttccgactcattcatccaaatgctgag 76
|||||||||||||| |||||||||||||| |||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgag 85
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 170 ctgtacttggactgaagggagctccct 196
|||| ||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccct 187
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 170 ctgtacttggactgaagggagctccct 196
|||| ||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctccct 173
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 170 ctgtacttggactgaagggagctccct 196
|||| ||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctccct 189
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 170 ctgtacttggactgaagggagctccct 196
|||| ||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccct 182
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 cttggactgaagggagctccct 196
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 cttggactgaagggagctccct 196
||||||||||||||||||||||
Sbjct: 160 cttggactgaagggagctccct 181
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 cttggactgaagggagctccct 196
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 cttggactgaagggagctccct 196
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 cttggactgaagggagctccct 196
||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccct 187
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 cttggactgaagggagctccct 196
||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccct 184
