miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 299 bits (151), Expect = 6e-81
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1 gcaccaagcatgaggcaacaactgcagtacttgtggggaaggcacaagtaggacaccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gcaccaagcatgaggcaacaactgcagtacttgtggggaaggcacaagtaggacaccaac 71
Query: 61 attacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtggctttcttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 attacctgcaagcaagacgcaaaattaatagaacatcaccatacttgtggctttcttgca 131
Query: 121 agtcgtgcagttgctgcctcaagcttgctgc 151
|||||||||||||||||||||||||||||||
Sbjct: 132 agtcgtgcagttgctgcctcaagcttgctgc 162
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 87.7 bits (44), Expect = 4e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 100 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
|||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgc 228
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 104 cttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttg 147
|||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 6
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 87.7 bits (44), Expect = 4e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 100 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
|||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 105 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgc 156
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 111 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgc 154
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 113 ttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
||||||||||| ||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgc 118
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 112 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
|||||||||||| ||||||||| || ||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgc 117
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 112 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
|||||||||||| ||||||||| || ||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgc 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 112 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
||||||||||| ||||||||||||||| ||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgc 12
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 126 tgcagttgctgcctcaagcttgctgc 151
||||||||||||||||||||||||||
Sbjct: 98 tgcagttgctgcctcaagcttgctgc 123
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 114 tcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
|||||||||| ||||||||||||||||||||| ||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgc 118
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 102 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttg 147
|||||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 16
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 112 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 151
||||||||||| ||||||||| || ||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgc 117
