miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 161 bits (81), Expect = 4e-39
Identities = 149/169 (88%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagatt-caattagctgccgactcattc 59
|||||||||| ||||||||||| |||| || ||||||| ||||||||||| |||||||||
Sbjct: 13 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 72
Query: 60 atccaaatgctgagtagtg-atactcttaaagatactcatcaaatgagtgaatgatgcgg 118
||||||||| |||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 73 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 132
Query: 119 gagacaaattgattcttaagtttcctgtacttggactgaagggagctcc 167
|||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 133 gagacaaattgaatcttaagtttcctatacttggactgaagggagctcc 181
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 137 bits (69), Expect = 5e-32
Identities = 145/168 (86%), Gaps = 3/168 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
|||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
Query: 61 tccaaatgctgagtagtgatactcttaaagat-actcatcaaatgagtgaatgatgcggg 119
||||||| |||||| | | | |||| || || ||||||||||||||||||||
Sbjct: 72 tccaaatactgagt--taaaggacaaggagattacccagtaaatgagtgaatgatgcggg 129
Query: 120 agacaaattgattcttaagtttcctgtacttggactgaagggagctcc 167
||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct: 130 agacaaattgaatcctaagcttcctgtacttggactgaagggagctcc 177
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 119 bits (60), Expect = 1e-26
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 159
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 160 ggagctcc 167
||||||||
Sbjct: 203 ggagctcc 210
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
|||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
Query: 61 tccaaatgctgagt 74
||||||| ||||||
Sbjct: 73 tccaaatactgagt 86
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 109 bits (55), Expect = 1e-23
Identities = 138/167 (82%), Gaps = 14/167 (8%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 60
||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcattca 72
Query: 61 tccaaatgctgagtagtgatactcttaaagatactcatcaaatgagtgaatgatgcggga 120
|||||||||||| | ||| || ||| |||||||||||||||||||||
Sbjct: 73 tccaaatgctgaat-gtg-------------tattcagtaaatgagtgaatgatgcggga 118
Query: 121 gacaaattgattcttaagtttcctgtacttggactgaagggagctcc 167
||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct: 119 gacaaattgtatcttaagcttcctgttattggactgaagggagctcc 165
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 109 bits (55), Expect = 1e-23
Identities = 141/169 (83%), Gaps = 13/169 (7%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgact-cattc 59
|||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 60 atccaaatgctgagtagtgatactcttaaaga-tactcatcaaatgagtgaatgatgcgg 118
|||||||| ||| | |||| || ||| || |||||| ||||||||||||
Sbjct: 73 atccaaatactg-----------tgttaaggactacccagtaaatgattgaatgatgcgg 121
Query: 119 gagacaaattgattcttaagtttcctgtacttggactgaagggagctcc 167
||||||||||| ||||||| | ||||| ||||||||||||||||||||
Sbjct: 122 gagacaaattggatcttaagctccctgtgcttggactgaagggagctcc 170
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 4e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 94 ctcatcaaatgagtgaatgatgcgggag-acaaattgattcttaagtttcctgtacttgg 152
|||| ||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 153 actgaagggagctcc 167
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 159
|||||| ||||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 160 ggagctcc 167
||||||||
Sbjct: 172 ggagctcc 179
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 159
|||||| ||| |||||||||||||||||| | |||||| ||||| | |||||||||||
Sbjct: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
Query: 160 ggagctcc 167
||||||||
Sbjct: 168 ggagctcc 175
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 35 gattcaattagctgccgactcattcatccaaat 67
||||||||||||| |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 100 aaatgagtgaatgatgcgggagacaaattg 129
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaat 67
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 91 atactcatcaaatgagtgaatgatgcgggagacaaattg 129
|||||| | |||||| |||||||||||| ||||||||||
Sbjct: 103 atactcgttaaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 39 caattagctgccgactcattcatccaaatgctgagt 74
||||||||| |||| |||||||||||||| ||||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaa 66
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcat 61
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcatccaaa 66
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcatccaaatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcatccaaatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcatccaaatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
