miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 133 bits (67), Expect = 6e-31
Identities = 105/117 (89%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||| ||||| ||||| | || ||||||||||||||||||| || ||||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagactta-ttttagt 62
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 61 tatagatacatccaatatatccatttttaggacaagtatttccggacggagggagta 5
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 87 tctaggacaagtatttccggacggagggagta 118
||||||||||||||||||||||||||||||||
Sbjct: 89 tctaggacaagtatttccggacggagggagta 120
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 133 bits (67), Expect = 6e-31
Identities = 105/117 (89%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||||||||||| || ||||| ||||| | ||||||||||||||||||||| || ||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagactta-ttttagt 62
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct: 61 tatagatacatctattatattcatttctaggacaagtatttctggacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 84 atttctaggacaagtatttccggacggagggagta 118
|||| ||||||||||||||||| ||||||||||||
Sbjct: 86 atttttaggacaagtatttccgaacggagggagta 120
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 125 bits (63), Expect = 1e-28
Identities = 104/117 (88%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||| |||||| ||||| | ||||| ||| ||||||||||| || ||||
Sbjct: 5 tactccctccgtctaaaaatacttgtcctaaaaatggatgaatctagactta-ttttagt 63
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct: 64 tatagatacatccattatatttatttttaggtcaagtatttccggacggagggagta 120
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 119 bits (60), Expect = 9e-27
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| |||
Sbjct: 120 atactccccccgtccggaaatacctgtcttcgaaatgaatgtatctagactt-attttag 62
Query: 61 ttatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
||||| |||||| |||| ||||||| | |||||||||||||| | |||||||||||||
Sbjct: 61 ttatacatacat-cattttatttatctttaggacaagtattttctgacggagggagta 5
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 117 bits (59), Expect = 3e-26
Identities = 103/117 (88%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||| ||||||| ||| | | |||||| ||||| |||||||| || ||||
Sbjct: 120 tactccctccgtctgaaaatacttgccctagaaatggttgtatgtagactta-ttttagt 62
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||
Sbjct: 61 tatagatacatcaattttattcatttctaggacaagtatttgcggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaat 40
||||||||||||||| ||||| ||||| | |||||||||
Sbjct: 5 tactccctccgtccgcaaatacttgtcctagaaatgaat 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 84 atttctaggacaagtatttccggacggagggagta 118
||||||||| ||||||||| | |||||||||||||
Sbjct: 86 atttctagggcaagtattttcagacggagggagta 120
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 117 bits (59), Expect = 3e-26
Identities = 103/117 (88%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||| ||||| |||| | |||||| |||||||||||| || ||||
Sbjct: 120 tactccctccgtccggaaatacttgttctaaggatgaatatatctagactta-ttttagt 62
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct: 61 tatagatacatccattatattcatttctgggacaagtatttccggacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 acaagtatttccggacggagggagta 118
||||||||||||||||||||||||||
Sbjct: 95 acaagtatttccggacggagggagta 120
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 103 bits (52), Expect = 5e-22
Identities = 102/118 (86%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
||||||||||| |||| ||||| ||||||| |||| |||||| |||| ||| || |||
Sbjct: 4 atactccctccatccggaaatacttgtcttaaaaatagatgtatgtagaatta-ttttag 62
Query: 61 ttatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
||||| ||||| ||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 63 ttataaatacacccattttatttatttctaggacaagtattttcggacggatggagta 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 83 tatttctaggacaagtatttccggacggagggagta 118
||||| || |||||||||||||||| ||||||||||
Sbjct: 40 tatttttaagacaagtatttccggatggagggagta 5
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 101 bits (51), Expect = 2e-21
Identities = 101/117 (86%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||| |||||||||| ||||| ||||| | | ||||||||||||||||||| || || |
Sbjct: 120 tactacctccgtccggaaatacttgtcctacagatgaatgtatctagactta-ttctaat 62
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
| |||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 61 tgtagatacatccattatatgtatttttaggacaagtattttcggacggatggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 89 taggacaagtatttccggacggagggagta 118
||||||||||||||||||||||||| ||||
Sbjct: 91 taggacaagtatttccggacggaggtagta 120
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 93.7 bits (47), Expect = 5e-19
Identities = 100/117 (85%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||||||| ||| |||||||| ||||| | || | ||||||||||||||| || || |
Sbjct: 5 tactcccttcgttcgaaaatacttgtcctaaaagtagatgtatctagactta-ttttact 63
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||||||| ||| |||| || |||||||||||||||||||||||||||
Sbjct: 64 tatagatacatccattttatacatttttatgacaagtatttccggacggagggagta 120
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 101/119 (84%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
||||||||||||||||||| || ||||| |||||| |||||||||||| | ||| |||
Sbjct: 4 atactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgt-attttag 62
Query: 61 ttatagatacatcca-ttntatttatttctaggacaagtatttccggacggagggagta 118
|| |||||||||||| || ||| |||||| ||||||| ||||||||||||||||||
Sbjct: 63 ttctagatacatccatttttatccatttctgcaacaagtagttccggacggagggagta 121
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 79.8 bits (40), Expect = 7e-15
Identities = 99/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||| ||||||| ||||| ||||| | | ||||||||||||| | ||| || |||
Sbjct: 121 atactccccccgtccggaaatacttgtcctaaagatgaatgtatctaaattta-ttttag 63
Query: 61 ttatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||| |||||||||||| ||| ||||||||||||| ||||| |||| |||||||||
Sbjct: 62 ttatggatacatccattatatccatttctaggacaaatattttcggatagagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 89 taggacaagtatttccggacggagggagta 118
|||||||||||||||||||||| |||||||
Sbjct: 91 taggacaagtatttccggacggggggagta 120
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 102/120 (85%), Gaps = 4/120 (3%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||||||||| || || ||||| | |||||| |||||||||||| | ||| |||
Sbjct: 122 atactccctccgtccggaattatttgtcatagaaatggatgtatctagacgt-attttag 64
Query: 61 ttatagatacatccattntattt--atttctaggacaagtatttccggacggagggagta 118
|| |||||||||||||| | ||| |||| | |||||||| ||||||||||||||||||
Sbjct: 63 ttctagatacatccatt-tctttccattttgacgacaagtacttccggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 84 atttctaggacaagtatttccggacggagggagta 118
||||||| ||||| || ||||||||||||||||||
Sbjct: 87 atttctatgacaaataattccggacggagggagta 121
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 73.8 bits (37), Expect = 5e-13
Identities = 100/119 (84%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||||||||| ||||| ||||| | |||| ||||||||||| || || |||
Sbjct: 122 atactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgta-ttttag 64
Query: 61 ttatagatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
|| |||||||||||||| | || ||||||| ||||||||||| ||||||||||||||
Sbjct: 63 ttctagatacatccatttttatgcatttctacgacaagtattttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 95 gacaagtatttccggacggagggagta 121
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 71.9 bits (36), Expect = 2e-12
Identities = 98/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||||||||| ||||| | |||| ||||||| | | ||| ||||
Sbjct: 122 tactccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttagt 63
Query: 62 tatagatacatccattn-tatttatttctaggacaagtatttccggacggagggagta 118
| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct: 62 tctagatacatccatttatatccatttctgcgacaagtatttccggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 91 ggacaagtatttccggacggagggagta 118
|||||||||||| |||||||||||||||
Sbjct: 95 ggacaagtattttcggacggagggagta 122
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 99/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||| ||||| ||||| | |||| ||||||||||| || || ||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgta-ttttagt 63
Query: 62 tatagatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
| |||||||||||||| | || ||||||| ||||||||||| ||||||||||||||
Sbjct: 64 tctagatacatccatttttatgcatttctacgacaagtattttgggacggagggagta 121
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 31 gacaagtatttccggacggagggagta 5
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 99/119 (83%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
||||| ||||||| || ||||| |||| || || ||||||||||||||| || ||| ||
Sbjct: 4 atactacctccgttcggaaatacttgttttagagatgaatgtatctaga-tttattttaa 62
Query: 61 ttatagatacatccattntatttatttctaggac-aagtatttccggacggagggagta 118
|||||||||| || || ||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 63 ttatagatacttcagttatatccatttctaggacaaagtattttgggacggagggagta 121
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 63.9 bits (32), Expect = 4e-10
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||| ||||| ||||| ||||| | |||| ||||| |||||| || || ||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgta-ttttagt 63
Query: 62 tatagatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
| |||||||||||||| | || |||||| |||||||||||| ||||||||||||||
Sbjct: 62 tctagatacatccatttttatgcatttctccgacaagtatttcaggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||||||||| |||||||||
Sbjct: 95 gacaagtatttccggacagagggagta 121
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 84 atttctaggacaagtatttccggacggagggagta 118
|||||||| ||||||||||||||||||||||||||
Sbjct: 103 atttctagaacaagtatttccggacggagggagta 137
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||||||||| ||||| | |||||| || |||||||| | ||| ||||
Sbjct: 111 tactccctccgtccgaaaatacttgtcattgaaatggatatatctaga-tgtattttagt 53
Query: 62 tatagatacatccatt 77
| |||| |||||||||
Sbjct: 52 tctagacacatccatt 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 85 gacaagtattttcggacggagggagta 111
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagac 50
||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtctgagaaattgatgtatctagac 53
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||||||||| ||||| ||||| ||||||||| |||||||| | ||| ||
Sbjct: 122 atactccctccgtccggaaatacttgtcggagaaatgaatctatctaga-tgtattttaa 64
Query: 61 ttatagatacatcca-ttntatttatttctaggacaagtatttccggacggagggagta 118
|| |||||||||||| || ||| |||| | |||||||| |||||||| |||||||||
Sbjct: 63 ttctagatacatccatttttatccatttatgcgacaagtaattccggacagagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 95 gacaagtatttccggacggagggagta 121
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||| ||||| ||||| ||||| | | |||| ||||||||||| || || |||
Sbjct: 4 atactccctctgtccggaaatatttgtcataggaatggatgtatctagatgta-ttttag 62
Query: 61 ttatagatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
|| |||||| ||||||| | || |||| | |||||||| ||||||||||||||||||
Sbjct: 63 ttctagatatatccatttttatccatttgtgtgacaagtaattccggacggagggagta 121
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 97/118 (82%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||||||||| |||||||||| ||| | | | |||| ||||||||||| | ||| ||||
Sbjct: 121 tactccctccatccgaaaatacttggcataggaatgtatgtatctaga-tatattttagt 63
Query: 62 tatagatacatcca-ttntatttatttctaggacaagtatttccggacggagggagta 118
| ||||||||| || || ||| ||||| | |||||||| ||||||||||| ||||||
Sbjct: 62 tctagatacattcatttttatatatttgtgcgacaagtaattccggacggacggagta 5
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 105 gacaagtatttccggacggagggagta 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||| |||||||||||||||||||||
Sbjct: 31 gacaaatatttccggacggagggagta 5
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 31 gacaagtatttccggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtc 28
|||||||||||||||||||||| |||||
Sbjct: 132 atactccctccgtccgaaaatacttgtc 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 105 gacaagtattttcggacggagggagta 131
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 105 gacaagtatttccggacggagggagta 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatg 37
||||||||||||||||||||| ||||| || |||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatg 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaat 40
||||||||||||||| ||||| ||||| || ||||||||
Sbjct: 131 tactccctccgtccggaaatacttgtcatcaaaatgaat 93
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 32 gaaatgaatgtatctagacttaattntagttatagatacatccatt 77
|||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 81 gaaatgaatgtatctagatgta-ttttagttatagatacatccatt 37
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 106 gacaagtatttccggacggagggagta 132
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 acaagtatttccggacggagggagta 118
||||||||||||||||||||||||||
Sbjct: 95 acaagtatttccggacggagggagta 120
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaa 39
||||||||||||||||||||| ||||| || |||||||
Sbjct: 130 tactccctccgtccgaaaatacttgtcatcaaaatgaa 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 79 tatttatttctaggacaagtatttccggacggagg 113
||||||||| | ||||||||||||||||||||||
Sbjct: 43 tatttattttgatgacaagtatttccggacggagg 9
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 104 gacaagtattttcggacggagggagta 130
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 64 tagatacatc-cattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||| | || ||||||||| | |||||||||||||||||||||| ||||
Sbjct: 60 tagatacatctccttttatttattttgatgacaagtatttccggacggaggaagta 5
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatg 37
|||||||||||||||||||||| ||||| || |||||
Sbjct: 132 atactccctccgtccgaaaatacttgtcatcaaaatg 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 105 gacaagtattttcggacggagggagta 131
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||||||||||| || || || |||||| |||||| |||||||||||| | ||| ||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgt-attttagt 53
Query: 62 tatagatacatccatt 77
| |||||| |||||||
Sbjct: 52 tctagatagatccatt 37
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 97/119 (81%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
||||||||| |||||| ||||| ||||| |||| ||||||||||| || || |||
Sbjct: 4 atactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgta-ttttag 62
Query: 61 ttatagatacatcca-ttntatttatttctaggacaagtatttccggacggagggagta 118
||||||||||||||| || |||| |||| | |||||||| ||||| | ||||||||||
Sbjct: 63 ttatagatacatccatttctattcatttttgcgacaagtaattccgcatggagggagta 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 91 ggacaagtatttccggacggagggagta 118
||||||||||||||||||| ||||||||
Sbjct: 32 ggacaagtatttccggacgaagggagta 5
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||| ||||||| ||||| ||||| | | |||| ||||||||||| | ||| ||||
Sbjct: 5 tactcccgccgtccggaaatacttgtcataggaatggatgtatctaga-tgtattttagt 63
Query: 62 tatagatacatccatt 77
| ||||||||||||||
Sbjct: 64 tctagatacatccatt 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||||||||||| |||||||
Sbjct: 31 gacaagtatttccggacggcgggagta 5
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatg 37
||||||||||||||||||||| ||||| || |||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatg 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtc 28
|||||||||||||||||||||| |||||
Sbjct: 143 atactccctccgtccgaaaatacttgtc 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 116 gacaagtattttcggacggagggagta 142
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtc 28
|||||||||||||||||||||| |||||
Sbjct: 132 atactccctccgtccgaaaatacttgtc 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 105 gacaagtattttcggacggagggagta 131
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 96/118 (81%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||| ||||||||||| ||||| | || ||| |||||||||| || || ||||
Sbjct: 5 tactccctctgtccgaaaatacttgtcattgagatgggtgtatctagatgta-ttttagt 63
Query: 62 tatagatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
| ||||||||| |||| | || |||| | ||||||||||| ||||| |||||||||
Sbjct: 64 tctagatacattcatttttatccattttgatgacaagtattttcggacagagggagta 121
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 91 ggacaagtatttccggacggagggagta 118
|||||||| |||||||||||||||||||
Sbjct: 91 ggacaagtttttccggacggagggagta 118
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 96/118 (81%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||||||||| | ||||||| ||||| | | |||| ||||||||||| || || || |
Sbjct: 121 tactccctccaactgaaaatacttgtcataggaatgtatgtatctagatgta-ttataat 63
Query: 62 tatagatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
| |||||||||||||| | || |||| | |||||||| ||||||||||||||||||
Sbjct: 62 tctagatacatccatttttatacatttatgtgacaagtaattccggacggagggagta 5
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||| ||||||
Sbjct: 31 gacaagtatttccggacggaaggagta 5
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||| ||||||||||||||||||
Sbjct: 95 gacaagtaattccggacggagggagta 121
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 33 aaatgaatgtatctagacttaattntagttatagatacatccatt 77
||||| |||||||||||| || || ||||| ||||||||||||||
Sbjct: 80 aaatggatgtatctagacata-ttttagttctagatacatccatt 37
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 32 gaaatgaatgtatctagacttaattntagttatagatacatccat 76
|||||||||||||||||| | ||| ||||| |||||||||||||
Sbjct: 81 gaaatgaatgtatctaga-tgtattttagttctagatacatccat 38
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 33 aaatgaatgtatctagacttaattntagttatagatacatccatt 77
||||| ||||||||||| || || ||||||||||||||||||||
Sbjct: 36 aaatggatgtatctagatgta-ttttagttatagatacatccatt 79
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagt 117
|||||||||||||| |||||||||||
Sbjct: 26 gacaagtatttccgaacggagggagt 1
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 33 aaatgaatgtatctagacttaattntagttatagatacatccatt 77
||||| |||||||||||| | || ||||| ||||||||||||||
Sbjct: 82 aaatggatgtatctagacgcatttttagttctagatacatccatt 38
