miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
           Indica Group
          Length = 110

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 93  tagccgtgcgtgccaaaggagaattgccct 122
           ||||| ||||||||||||||||||||||||
Sbjct: 70  tagccatgcgtgccaaaggagaattgccct 99





>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 99  tgcgtgccaaaggagaattgccct 122
           ||||||||||||||||||||||||
Sbjct: 84  tgcgtgccaaaggagaattgccct 107





>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 100 gcgtgccaaaggagaattgccct 122
           |||||||||||||||||||||||
Sbjct: 78  gcgtgccaaaggagaattgccct 100





>RF00445;mir-399;AACV01002284.1/925-1073 39947:Oryza sativa Japonica
           Group
          Length = 149

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 101 cgtgccaaaggagaattgccct 122
           ||||||||||||||||||||||
Sbjct: 117 cgtgccaaaggagaattgccct 138





>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
           Japonica Group
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 101 cgtgccaaaggagaattgccct 122
           ||||||||||||||||||||||
Sbjct: 65  cgtgccaaaggagaattgccct 86