miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 129 bits (65), Expect = 4e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 78
Query: 61 agtga 65
|||||
Sbjct: 79 agtga 83
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 78
Query: 59 caagtga 65
|||||||
Sbjct: 79 caagtga 85
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 69.9 bits (35), Expect = 3e-12
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 78
Query: 59 caagtga 65
|||||||
Sbjct: 79 caagtga 85
