miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggctcctggtattgggggaatctcagctttgctgaagcgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggctcctggtattgggggaatctcagctttgctgaagcgcct 72
Query: 61 tggagttagccggcaagtctgtccttggct 90
||||||||||||||||||||||||||||||
Sbjct: 73 tggagttagccggcaagtctgtccttggct 102
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggctcctgg 27
|||||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggctcctgg 39
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggctcct 25
|||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggctcct 37
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya
(papaya)
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggctc 23
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggctc 35
>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
(papaya)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggct 22
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggct 34
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggct 22
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggct 36
>RF00645;MIR169_2;BABK01022237.1/713-821 34305:Lotus japonicus
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgccggct 22
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggct 34
