miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 337 bits (170), Expect = 3e-92
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 61 tcccacagccctataagcagagattataattttggataggcttgtggcttgcatatctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tcccacagccctataagcagagattataattttggataggcttgtggcttgcatatctca 131
Query: 121 ggagcttcattaccttgtattagatccttgtttggattgaagggagctct 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggagcttcattaccttgtattagatccttgtttggattgaagggagctct 181
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 121 bits (61), Expect = 3e-27
Identities = 145/170 (85%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 61
|||||||||||||||||||||| | || || ||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 62 cccacagccctataagca-gagattataattttggataggcttgtggcttgcatatctca 120
||||||||||||| | || || | ||||| ||| ||| || |||||||||||||||
Sbjct: 61 cccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcatatctca 115
Query: 121 ggagcttcattaccttgtattagatccttgtttggattgaagggagctct 170
||||||| ||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 116 ggagctttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 117 bits (59), Expect = 5e-26
Identities = 145/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 60
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 71
Query: 61 tcccacagccctataagcagagattataattttggataggcttgtggcttgcatatctca 120
|||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 72 tcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatatctca 131
Query: 121 ggagcttcatta-ccttgtattagatccttgtttggattgaagggagctct 170
|||||| ||||| || || |||||||||||||||||||||||||||||||
Sbjct: 132 ggagctgcattatccaagt-ttagatccttgtttggattgaagggagctct 181
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 113 bits (57), Expect = 8e-25
Identities = 141/169 (83%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 61
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 121
||||||||||| | || || | || ||| |||||||| || |||||||||||||
Sbjct: 73 tccacagccctacccgaagttatactttttctgggtaggcttgcggtttgcatatctcag 132
Query: 122 gagcttcattaccttgtattagatccttgtttggattgaagggagctct 170
||||| ||||||| | | |||||||||||||||||||||||||||
Sbjct: 133 gagctgcattaccctaagcttaatccttgtttggattgaagggagctct 181
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 93.7 bits (47), Expect = 7e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 60
||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga 71
Query: 61 tcc 63
|||
Sbjct: 72 tcc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 67.9 bits (34), Expect = 4e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 60
||||||||||||||||||| ||| ||||| || |||||||||||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgga 71
Query: 61 tcccacagccctat 74
| || |||||||||
Sbjct: 72 ttcctcagccctat 85
