miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 198 bits (100), Expect = 2e-50
Identities = 136/151 (90%), Gaps = 14/151 (9%)
Strand = Plus / Minus
Query: 1 cctgcacctgcacctgcacctcaactaagcttattagtttccatatctaacactctatat 60
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cctgcacttgcacctgcacctcaactaagcttattagtttccatatctaa---------- 107
Query: 61 ctaattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ----ttgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaa 51
Query: 121 acaaacgcaaaagatgcaggtgcaaatgcag 151
|||||||||||||||||||||||||||||||
Sbjct: 50 acaaacgcaaaagatgcaggtgcaaatgcag 20
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 cctgcacctgcacctgcacctcaa 24
||||||||||||||||||||||||
Sbjct: 128 cctgcacctgcacctgcacctcaa 105
