miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 89.7 bits (45), Expect = 6e-18
Identities = 83/95 (87%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcatgatgaacgatcgagag---gttc 57
|||||||||||||||||||||||||| ||||||||||| |||| | | ||| ||||
Sbjct: 5 cagaagagagtgagcacacatggtgcttttcttgcatggtgaattaatgggagagagttc 64
Query: 58 atgctcgaagctatgcgtgctcacttctctctctg 92
||||| ||||||||| |||||||||||||||||||
Sbjct: 65 atgcttgaagctatgtgtgctcacttctctctctg 99
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 78/92 (84%), Gaps = 7/92 (7%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcatgatgaacgatcgagaggttcatg 60
||||||||||||||||||||||||| |||||||||||| |||| | | |||||
Sbjct: 5 cagaagagagtgagcacacatggtgactttcttgcatgctgaatg-------gactcatg 57
Query: 61 ctcgaagctatgcgtgctcacttctctctctg 92
|| ||||||||| |||||||||||||||||||
Sbjct: 58 cttgaagctatgtgtgctcacttctctctctg 89
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcat 37
||||||||||||||||||||||||| |||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtggctttcttgcat 41
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 56.0 bits (28), Expect = 8e-08
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgca 36
||||||||||||||||||||||||| ||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtg-ctttcttgca 39
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 56.0 bits (28), Expect = 8e-08
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 2 agaagagagtgagcacacatggtgcctttcttgcatgatg 41
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 6 agaagagagtgagcacacatggtg-ttttcttgcatgatg 44
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 57 catgctcgaagctatgcgtgctcacttctctctctg 92
|||||| |||||||||||||||||||||||| ||||
Sbjct: 49 catgcttgaagctatgcgtgctcacttctctatctg 84
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcatg 38
||||||||||||||||||||||||| |||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtg-gtttcttgcatg 41
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtg 25
|||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatgg 23
|||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatgg 27
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcatga 39
|||||||||||||||||||| ||| |||||||||||||
Sbjct: 5 cagaagagagtgagcacacagggt-actttcttgcatga 42
>RF00073;mir-156;AM467075.2/5013-4925 29760:Vitis vinifera
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcatga 39
|||| |||||||||||| |||||| | ||||||||||||
Sbjct: 5 cagaggagagtgagcactcatggttcttttcttgcatga 43
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 agctatgcgtgctcacttctctctctg 92
||||| |||||||||||||||||||||
Sbjct: 61 agctacgcgtgctcacttctctctctg 87
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgcctttcttgcatg 38
||||||||||||||||| ||||| | |||||||||||
Sbjct: 5 cagaagagagtgagcacccatggcgtttttcttgcatg 42
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcgtgctcacttctctctctg 92
||||||||||||||||||||||
Sbjct: 94 tgcgtgctcacttctctctctg 115
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcgtgctcacttctctctctg 92
||||||||||||||||||||||
Sbjct: 87 tgcgtgctcacttctctctctg 108
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcgtgctcacttctctctctg 92
||||||||||||||||||||||
Sbjct: 89 tgcgtgctcacttctctctctg 110
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgc 26
|||||||||||||||||||| |||||
Sbjct: 5 cagaagagagtgagcacacacggtgc 30
