miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02019539.1/50507-50413 39946:Oryza sativa
Indica Group
Length = 95
Score = 107 bits (54), Expect = 2e-23
Identities = 61/62 (98%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 7 aaataaacca-cctactaagcatgtgacacatcctagtaccaggttggtttattttggga 65
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aaataaaccaacctactaagcatgtgacacatcctagtaccaggttggtttattttggga 16
Query: 66 cg 67
||
Sbjct: 15 cg 14
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 61.9 bits (31), Expect = 9e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 29 gtgacacatcctagtaccaggttggtttattttgggacg 67
||||||||||||||||| ||||||| |||||||||||||
Sbjct: 52 gtgacacatcctagtacgaggttggcttattttgggacg 14
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 39 ctagtaccaggttggtttattttgggacg 67
||||||| ||||||| |||||||||||||
Sbjct: 56 ctagtacgaggttggcttattttgggacg 84
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 61.9 bits (31), Expect = 9e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 33 cacatcctagtaccaggttggtttattttgggacg 67
||||||||||||| |||||||||||||||||||||
Sbjct: 48 cacatcctagtacgaggttggtttattttgggacg 14
>RF00906;MIR1122;AP008216.1/15579713-15579809 39947:Oryza sativa
Japonica Group
Length = 97
Score = 60.0 bits (30), Expect = 3e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 30 tgacacatcctagtaccaggttggtttattttgggacg 67
|||||| ||||||||| |||||||||||||||||||||
Sbjct: 47 tgacacttcctagtacgaggttggtttattttgggacg 84
>RF00906;MIR1122;AP008212.1/6831401-6831305 39947:Oryza sativa
Japonica Group
Length = 97
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 27 atgtgacacatcctagtaccaggttggtttattttgggacg 67
|||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 44 atgtgacacatccttgtacgaggttaatttattttgggacg 84
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 32 acacatcctagtaccaggttggtttattttgggacg 67
|||||| ||||||| |||||||||||||||| ||||
Sbjct: 49 acacatactagtacgaggttggtttattttgagacg 84
>RF00906;MIR1122;AACV01013045.1/9312-9408 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 29 gtgacacatcctagtaccaggttggtttattttgggac 66
||||||||||||||||| |||||| || |||||||||
Sbjct: 52 gtgacacatcctagtactaggttgcctttttttgggac 15
>RF00906;MIR1122;AAAA02007860.1/10023-9886 39946:Oryza sativa Indica
Group
Length = 138
Score = 42.1 bits (21), Expect = 8e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 27 atgtgacacatcctagtaccaggttggtttattttgggacg 67
||||| ||||||| ||||| || ||||||||||||||||||
Sbjct: 86 atgtggcacatcc-agtacgagattggtttattttgggacg 125
