miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 153 bits (77), Expect = 5e-37
Identities = 92/97 (94%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||| ||| ||||||||||||||||||||||||||||
Sbjct: 41 ctacgctcaagacacttattttggaacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||| ||||||||| ||||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 137 bits (69), Expect = 3e-32
Identities = 91/97 (93%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| |||||||||||||||||| ||||||||||||
Sbjct: 41 ctaaggttgagacacttattttgggacggagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 68 tgagacacttattttggaacggagggagta 97
||||||||||||||||| ||||||||||||
Sbjct: 71 tgagacacttattttgggacggagggagta 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaac 32
||||||||||||| |||||||| |||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 137 bits (69), Expect = 3e-32
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||| |
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaattaca 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||||||||||||||||||| ||||||||||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||| ||||||||||||
Sbjct: 71 ttgagacacttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||||||||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 137 bits (69), Expect = 3e-32
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaattgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| || |||||||||||||| ||||||||||||
Sbjct: 41 ctaagattaagacacttattttgagacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtct 28
|||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtctcaaaataagtgtct 32
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 131 bits (66), Expect = 2e-30
Identities = 78/82 (95%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 42
Query: 61 ctaagcttgagacacttatttt 82
|||||||| |||||||||||||
Sbjct: 41 ctaagcttaagacacttatttt 20
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 129 bits (65), Expect = 7e-30
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||| |||||||| |||||||||||||||||||||||| ||| | ||||| |||||||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||||| ||||||||||||||||||||||||||||
Sbjct: 41 ttaagcttaagacacttattttggaacggagggagta 5
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 129 bits (65), Expect = 7e-30
Identities = 86/93 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42
Query: 61 ctaagcttgagacacttattttggaacggaggg 93
|||||||| ||||||||||||||| ||||||||
Sbjct: 41 ctaagcttaagacacttattttgggacggaggg 9
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 129 bits (65), Expect = 7e-30
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||||| |||||||| |||||||| |||||||||||||||||| ||| |||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagttgta 64
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||||||| | ||||||||||||||||||||||
Sbjct: 65 ctaagcttgagatagttattttggaacggagggagta 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||||||||||||||||
Sbjct: 35 ttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 129 bits (65), Expect = 7e-30
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| || ||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttata 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||| ||||| ||||||||| ||||||||||||
Sbjct: 41 ctaagcttaagacagttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtct 28
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||| ||||||||| ||||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 129 bits (65), Expect = 7e-30
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||| ||||||||||||||| || || ||||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||||||||||||||||||| ||||||||||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||||||||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||| ||||||||| ||||||||||||
Sbjct: 71 ttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||| ||| ||| |||||||| || ||||||||||
Sbjct: 41 ctaagcatgaaacaattattttgaaatggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||| |||||||| |||||||||||||
Sbjct: 71 ttgagacatttattttgaaacggagggagta 101
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| ||||||||||||||||||||| |||||| |||| |||||| || ||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttata 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||| ||||| ||||||||| ||||||||||||
Sbjct: 41 ctaagcttaagacagttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtct 28
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||| ||||||||| ||||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| ||
Sbjct: 101 tactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattata 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||| ||||||||||||| ||||||| |||||
Sbjct: 41 ctaagcttaagacacttattttaaaacggagagagta 5
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| |||||| | ||||||||| ||||||||||||
Sbjct: 41 ctaagtttgagaaagttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||| ||||||||||||||| || || ||||| || |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||||||||||||||||||| ||||||||||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||||||||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||| ||||||||| ||||||||||||
Sbjct: 71 ttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 113 bits (57), Expect = 4e-25
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||| || |||||||| |||||||||||||||||| |||||||| ||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||||| ||||||||||||||| ||||||||||||
Sbjct: 41 ctaagctcaagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||| | ||||||||||
Sbjct: 71 ttgagacacttattttgggatggagggagta 101
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 113 bits (57), Expect = 4e-25
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||||||||||||||| | ||||| |||| ||||||||||||||||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| |||||| | ||||||||| ||||||||||||
Sbjct: 41 ctaagtttgagaaagttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 113 bits (57), Expect = 4e-25
Identities = 88/97 (90%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
| ||| |||||||| |||||||| ||||||||||||
Sbjct: 40 caaag-ttgagacagttattttgagacggagggagta 5
Score = 77.8 bits (39), Expect = 2e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtac 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaactttgtac 43
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 113 bits (57), Expect = 4e-25
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| |||||||| ||||| |||||||||||| || ||||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||| ||||||||||||||||||| ||||||||||||
Sbjct: 41 ctaggcttgagacacttattttgagacggagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
|||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaa 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 70 agacacttattttggaacggagggagta 97
||||||||||||||| ||||||||||||
Sbjct: 74 agacacttattttgggacggagggagta 101
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||| |||||| |||||||| |||||||| ||| |||| |||||||| ||| |||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| |||||||||||||||||| ||||||||||||
Sbjct: 65 ctaaggttgagacacttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaac 32
||||||||||||| |||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaac 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||| ||||| ||||||
Sbjct: 35 ttgagacacttattttgggacggaaggagta 5
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 105 bits (53), Expect = 1e-22
Identities = 87/97 (89%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||| || |||||||| ||||||||||||||||||| ||||||| ||| |||||
Sbjct: 100 tactccctcc-tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgta 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||| |||||||||| ||||||||| |||||| |||||
Sbjct: 41 ctaggcttgagacagttattttgggacggagtgagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||| ||||||| |||||||||||||||||
Sbjct: 5 tactcactccgtcccaaaataactgtctcaa 35
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||| |||||| |||||||| |||||||||||| |||||||| ||||| ||| |||||
Sbjct: 5 tactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgta 64
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||| |||||||| ||||||||| ||||||||||||
Sbjct: 65 ttaagtttgagacagttattttgggacggagggagta 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
||||||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||| ||||| ||||||
Sbjct: 35 ttgagacacttattttgggacggatggagta 5
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 15 caaaataactgtctcaactttgtactagctctagtataaaattgtactaagcttgagaca 74
|||||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 87 caaaataagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagaca 28
Query: 75 cttattttggaacggagggagta 97
|||||||| | ||||||||||
Sbjct: 27 gttattttgagatggagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
|||||||||| ||||||||||||||||||||
Sbjct: 5 tactccctccatctcaaaataactgtctcaa 35
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||||| |||||||||
Sbjct: 71 ttgagacacttattttggaagagagggagta 101
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct: 5 tactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagttgta 64
Query: 61 ctaagcttgagacacttattttgg 84
||||| |||||| | |||||||||
Sbjct: 65 ctaagtttgagaaagttattttgg 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtc 27
||||||||||||| |||||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 89.7 bits (45), Expect = 6e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 3 ctccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgtact 62
||||||||||| |||||||| ||||||||||||||||||||| || || ||| |||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtact 66
Query: 63 aagcttgagacacttattttg 83
| |||||||||||||||||
Sbjct: 67 agagttgagacacttattttg 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 67 ttgagacacttattttggaacggagggag 95
|||||||||||||||||| ||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggag 7
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 89.7 bits (45), Expect = 6e-18
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||| || |||||||| ||| | || |||||| ||||| ||||||||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttata 42
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| |||||||||||||||| ||||||| ||||||
Sbjct: 41 ctaagattgagacacttattttagaacggaaggagta 5
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 89.7 bits (45), Expect = 6e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||| || |||||||||||||| ||||||||||||||| || |||||| || ||
Sbjct: 5 tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
||||| || ||||| |||||||| ||||||||||||
Sbjct: 65 ctaagtttaagacatttattttgcgacggagggagta 101
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||| |||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagttgta 90
Query: 61 ctaagcttgaga 72
||||| ||||||
Sbjct: 89 ctaaggttgaga 78
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 25 gtctcaactttgtactagctctagtataaaattgtactaagcttgagacacttattttgg 84
||||||||||||||||| | |||| ||| |||||||||| ||||||||||||||||||
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18
Query: 85 aacggagggag 95
||| ||||||
Sbjct: 17 gacgaagggag 7
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 66 cttgagacacttattttggaacggagggagta 97
||||||||| ||||||||| ||||||||||||
Sbjct: 118 cttgagacagttattttgggacggagggagta 149
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 81.8 bits (41), Expect = 2e-15
Identities = 84/97 (86%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||||||||||||||| | ||| || ||| |||||||| |||| ||| || ||
Sbjct: 5 tactccctccgtctcaaaataagtttcttaattttatactagct-tagtgcaaagttata 63
Query: 61 ctaagcttgagacacttattttggaacggagggagta 97
|||||||||||||| |||||||| ||||||||||||
Sbjct: 64 ctaagcttgagacaattattttgagacggagggagta 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaa 31
|||||||||||||||||||||| ||||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctcaa 70
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||||||||| || |||||||| |||||||||||||||||| || ||||| ||| |||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgta 49
Query: 61 ctaagct 67
|||||||
Sbjct: 48 ctaagct 42
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
|||||||||||||||||| | ||||||||||
Sbjct: 78 ttgagacacttattttgggatggagggagta 108
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 67.9 bits (34), Expect = 2e-11
Identities = 83/98 (84%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaattgta 60
|||| ||||||||||||||||||||||| |||||| || || | ||||||||||||||
Sbjct: 102 tacttcctccgtctcaaaataactgtcttaactttatattaatttcagtataaaattgta 43
Query: 61 -ctaagcttgagacacttattttggaacggagggagta 97
|||| || | ||| |||||||| |||||||||||||
Sbjct: 42 tttaagtttaaaacagttattttgaaacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgt 26
|||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtttcaaaataactgt 30
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 68 tgagacacttattttggaacggagggagta 97
||||||||||||||||||||||||||||||
Sbjct: 101 tgagacacttattttggaacggagggagta 130
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 83/98 (84%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaaatt-gt 59
|||||||||||| |||||| || ||||||||||||||| || ||||| |||||| ||
Sbjct: 101 tactccctccgttctaaaatagatgactcaactttgtactaactatagtacaaaattagt 42
Query: 60 actaagcttgagacacttattttggaacggagggagta 97
|| ||| ||||| || |||||||||||||||||||||
Sbjct: 41 acaaag-ttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 58.0 bits (29), Expect = 2e-08
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactg--tctcaactttgtactagctctagtataaaatt- 57
||||||||||||| |||||||| || |||||||||| ||||| | ||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataagtggatctcaactttatactatttttagtacaaaatta 64
Query: 58 gtactaagcttgagacacttattttggaacggagggagta 97
|||| ||| ||||| ||||||||| || ||||||||||||
Sbjct: 65 gtacaaag-ttgagtcacttatttcgggacggagggagta 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtacta 41
||||||||||||| | |||||| || |||||||||||||||
Sbjct: 103 tactccctccgtcccgaaataagtgactcaactttgtacta 63
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtacta 41
||||||||||||| |||||||| || |||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtacta 60
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
||||| |||||||||||| ||||||||||||
Sbjct: 70 ttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtacta 41
||||||||||||| |||||||| || |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaactttgtacta 45
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 67 ttgagacacttattttggaacggagggagta 97
||||| |||||||||||| ||||||||||||
Sbjct: 35 ttgagtcacttattttgggacggagggagta 5
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 46 tagtataaaattgtactaagcttgagacacttattttggaacggagggagta 97
|||||||| |||||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 39 tagtataactttgtactaag-ttgagacacttattttgggacggaggaagta 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 46 tagtataaaattgtactaagcttgagacacttattttggaacggagggag 95
||||| ||| || |||||| |||||||||||||||||| ||||||||||
Sbjct: 56 tagtacaaagttatactaaagttgagacacttattttgggacggagggag 7
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 ctccctccgtctcaaaataactgtctcaacttt 35
||||||||||| |||||||| ||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttt 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtac 39
|||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaacttagtac 51
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtct-caactttgtacta 41
||||||||||||| |||||||| ||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctccaactttgtacta 46
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 69 gagacacttattttggaacggagggagta 97
|||||||||||||||| ||||||||||||
Sbjct: 33 gagacacttattttgggacggagggagta 5
>RF00906;MIR1122;EU730897.1/72285-72181 15368:Brachypodium
distachyon
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 56 ttgtactaagcttgagacacttattttggaacggagggagta 97
|||||||||| ||||||||||||| |||| |||||||||||
Sbjct: 60 ttgtactaagtctgagacacttattatggatcggagggagta 101
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtacta 41
||||||||| ||| |||||||| || |||||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaactttgtacta 45
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagta 50
||||||||||||| |||| ||| || ||||||||| ||||| || |||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagta 41
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 cacttattttggaacggagggagta 97
|||||||||||||||||||||||||
Sbjct: 61 cacttattttggaacggagggagta 85
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 58 gtactaagcttgagacacttattttggaacggagggagta 97
||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 44 gtactaaatttgcgacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 gacacttattttggaacggagggagta 97
|||||||||||||| ||||||||||||
Sbjct: 76 gacacttattttgggacggagggagta 102
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 71 gacacttattttggaacggagggagta 97
|||||||||||||||||||| ||||||
Sbjct: 31 gacacttattttggaacggaaggagta 5
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
||||| |||||||||||| ||||||||||||
Sbjct: 82 ttgagtcacttattttgggacggagggagta 112
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ttgagacacttattttggaacggagggagta 97
||||| |||||||||||| ||||||||||||
Sbjct: 81 ttgagtcacttattttgggacggagggagta 111
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 gacacttattttggaacggagggagta 97
||||||||||||||| |||||||||||
Sbjct: 64 gacacttattttggatcggagggagta 90
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 72 acacttattttggaacggagggagta 97
||||||||||||| ||||||||||||
Sbjct: 27 acacttattttgggacggagggagta 2
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataa 22
||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataa 23
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgta 38
||||||||||||| |||| ||| || ||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaactttgta 42
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagta 50
|||| ||||||| |||||||| || ||||||||||||||| || |||||
Sbjct: 90 tacttcctccgtttcaaaatagatgactcaactttgtactaactttagta 41
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataactgtctcaactttgtactagctctagtataaa 54
|||||||||||| ||||||| || ||||||||||||||| || |||| ||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaactttagtgtaaa 58
>RF00906;MIR1122;EU730898.1/15478-15583 15368:Brachypodium
distachyon
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 68 tgagacacttattttggaacggagggagta 97
||||||||||||| |||| |||||||||||
Sbjct: 73 tgagacacttattatggatcggagggagta 102
>RF00906;MIR1122;EU730894.1/50807-50703 15368:Brachypodium
distachyon
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 68 tgagacacttattttggaacggagggagta 97
|||||||||||||||||| |||||| ||||
Sbjct: 72 tgagacacttattttggatcggaggcagta 101
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgtctcaaaataa 22
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataa 22
||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataa 95
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tactccctccgtctcaaaataa 22
||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72
