miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 131 bits (66), Expect = 1e-30
Identities = 76/78 (97%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaccg-agcatcgctggcctccgtggatg 63
Query: 61 gcgtatgaggagccatgc 78
||||||||||||||||||
Sbjct: 64 gcgtatgaggagccatgc 81
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 131 bits (66), Expect = 1e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtggatg 64
Query: 61 gcgtatgaggagccatgc 78
||||||||||||||||||
Sbjct: 65 gcgtatgaggagccatgc 82
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 131 bits (66), Expect = 1e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggatg 64
Query: 61 gcgtatgaggagccatgc 78
||||||||||||||||||
Sbjct: 65 gcgtatgaggagccatgc 82
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 99.6 bits (50), Expect = 5e-21
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
||||||||||||||||||||| ||| ||||||| || || ||||||| ||||||||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatcg-agtatcgatgacctccgtggatg 63
Query: 61 gcgtatgaggagccatgc 78
||||||||||||||||||
Sbjct: 64 gcgtatgaggagccatgc 81
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 69.9 bits (35), Expect = 4e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
|||||||||||||||||||||||| ||||| || || | |||| ||| ||| ||||||
Sbjct: 5 gcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttggatg 64
Query: 61 gcgtatgaggagcca 75
|||||||||||||||
Sbjct: 65 gcgtatgaggagcca 79
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
|||||||||||||||||||||||||| || ||||| ||| || | | |||| || |||||
Sbjct: 5 gcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcggatg 64
Query: 61 gcgtatgaggagccatgc 78
|||| ||||||||||||
Sbjct: 65 gcgtgcgaggagccatgc 82
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccg 36
|||||||||||||||||||||||||| ||| |||||
Sbjct: 5 gcctggctccctgtatgccatttgcaaagctcaccg 40
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagag 29
|||||||||||||||||||||||| ||||
Sbjct: 5 gcctggctccctgtatgccatttgtagag 33
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggatg 60
||||||||||||| |||||||||||| ||| || | || | ||| |||||| |||||||
Sbjct: 5 gcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggatg 64
Query: 61 gcgt 64
||||
Sbjct: 65 gcgt 68
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttg 28
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgca 26
||||||||||||||||||||| ||||
Sbjct: 5 gcctggctccctgtatgccatctgca 30
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 gtggatggcgtatgaggagcca 75
||||||||||||||||||||||
Sbjct: 58 gtggatggcgtatgaggagcca 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccat 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||| ||||
Sbjct: 5 gcctggctccctgtatgccacttgc 29
